Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_C02
(466 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O62742|NLTP_RABIT Nonspecific lipid-transfer protein, mi... 193 2e-49
sp|P32020|NLTP_MOUSE Nonspecific lipid-transfer protein, mi... 191 5e-49
sp|P11915|NLTP_RAT Nonspecific lipid-transfer protein, mito... 190 2e-48
sp|P22307|NLTP_HUMAN Nonspecific lipid-transfer protein, mi... 189 3e-48
sp|Q07598|NLTP_CHICK Nonspecific lipid-transfer protein, mi... 172 3e-43
sp|O26884|Y793_METTH Hypothetical protein MTH793 108 5e-24
sp|Q58944|YF49_METJA Hypothetical protein MJ1549 79 7e-15
sp|Q05493|THIK_YARLI 3-ketoacyl-CoA thiolase, peroxisomal p... 49 7e-06
sp|P07871|THIKB_RAT 3-ketoacyl-CoA thiolase B, peroxisomal ... 49 7e-06
sp|P21775|THIKA_RAT 3-ketoacyl-CoA thiolase A, peroxisomal ... 49 7e-06
>sp|O62742|NLTP_RABIT Nonspecific lipid-transfer protein, mitochondrial precursor (Sterol
carrier protein 2) (SCP-2) (Sterol carrier protein X)
(SCP-X) (SCPX)
Length = 547
Score = 193 bits (490), Expect = 2e-49
Identities = 91/119 (76%), Positives = 98/119 (82%)
Frame = +3
Query: 6 YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
Y +SGL+P+D VIELHDCFSANEL+TYEALGLCP G+ G +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLRPSDIDVIELHDCFSANELLTYEALGLCPEGKGGALVDRGDNTYGGKWVINPSG 348
Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
GLISKGHPLGATG+AQC ELC LR EAGKRQV A ALQHNLGLGGAA V YK GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYKMGF 407
>sp|P32020|NLTP_MOUSE Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 191 bits (486), Expect = 5e-49
Identities = 91/119 (76%), Positives = 95/119 (79%)
Frame = +3
Query: 6 YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
Y +SGL PND VIELHDCFS NELITYEALGLCP GQ G +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLTPNDVDVIELHDCFSVNELITYEALGLCPEGQGGTLVDRGDNTYGGKWVINPSG 348
Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
GLISKGHPLGATG+AQC ELC LR EAGKRQV A ALQHNLGLGGA V Y+ GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAVVVTLYRMGF 407
>sp|P11915|NLTP_RAT Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 190 bits (482), Expect = 2e-48
Identities = 90/119 (75%), Positives = 96/119 (80%)
Frame = +3
Query: 6 YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
Y +SGL P+D VIELHDCFS NEL+TYEALGLCP GQ G +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLGPSDVDVIELHDCFSTNELLTYEALGLCPEGQGGALVDRGDNTYGGKWVINPSG 348
Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
GLISKGHPLGATG+AQC ELC LR EAGKRQV A ALQHNLGLGGAA V Y+ GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGF 407
>sp|P22307|NLTP_HUMAN Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 189 bits (480), Expect = 3e-48
Identities = 89/119 (74%), Positives = 94/119 (78%)
Frame = +3
Query: 6 YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
Y +SGL PND VIELHDCFS NEL+TYEALGLCP GQ +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSG 348
Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
GLISKGHPLGATG+AQC ELC LR EAGKRQV A ALQHNLG+GGA V YK GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGF 407
>sp|Q07598|NLTP_CHICK Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 172 bits (437), Expect = 3e-43
Identities = 84/119 (70%), Positives = 91/119 (76%)
Frame = +3
Query: 6 YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
+ ++GLKP D VIELHDCFS NE ITYEALGLCP G+A ID GDNTYGGK VINPSG
Sbjct: 292 FKKAGLKPTDVDVIELHDCFSVNEFITYEALGLCPEGKACDLIDRGDNTYGGKWVINPSG 351
Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
GLISKGHPLGATG+AQ ELC LR AG+R+V A ALQHNLGLGGA V Y GF
Sbjct: 352 GLISKGHPLGATGLAQSAELCWQLRGLAGRREVGGARRALQHNLGLGGAVVVTLYAMGF 410
>sp|O26884|Y793_METTH Hypothetical protein MTH793
Length = 383
Score = 108 bits (271), Expect = 5e-24
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Frame = +3
Query: 6 YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
+ + L P D ++E+HDCFS N ++ E LG G+ GR ++G G +NPSG
Sbjct: 266 FKMAKLTPGDIDLVEVHDCFSINGILAVEDLGFVEKGEGGRAFEDGMTRIDGDIPVNPSG 325
Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNL-GLGGAAFVAAYKK 356
GL ++GHPLGATG+AQ E+ LR EAGKRQV+ A + HN+ G GG A V + +
Sbjct: 326 GLKARGHPLGATGIAQAAEVVWQLRGEAGKRQVEGAEIGMTHNIGGTGGTAAVHIFSR 383
>sp|Q58944|YF49_METJA Hypothetical protein MJ1549
Length = 392
Score = 78.6 bits (192), Expect = 7e-15
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Frame = +3
Query: 6 YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNT--YGGKHVINP 179
Y + ++P D V E+HDCF+ N LI E LG C G+AG+ + + Y G +NP
Sbjct: 268 YKMANIEPKDVDVAEVHDCFAINGLILMEELGFCKKGEAGKIVYDKKIAIDYDGFPAVNP 327
Query: 180 SGGLISKGHPLGATGVAQCVELCLHLR--NEAGKRQVQSAT-YALQHNLG 320
SGGL + GH LGATG+ Q E+ L+ E RQV+ Y + N+G
Sbjct: 328 SGGLKAAGHALGATGIRQVGEIYWQLKQDKEVKDRQVEIKNGYGITVNVG 377
>sp|Q05493|THIK_YARLI 3-ketoacyl-CoA thiolase, peroxisomal precursor (Beta-ketothiolase)
(Acetyl-CoA acyltransferase) (Peroxisomal 3-oxoacyl-CoA
thiolase)
Length = 414
Score = 48.5 bits (114), Expect = 7e-06
Identities = 34/115 (29%), Positives = 48/115 (41%)
Frame = +3
Query: 3 VYNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPS 182
V GL ND V E+++ F++ L + + G+ + +NP
Sbjct: 321 VLEDLGLTVNDVDVFEINEAFASQALFSIQHCGI------------------DESKVNPR 362
Query: 183 GGLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAA 347
GG I+ GHPLGATG Q L L+ K V S G+G A+ V A
Sbjct: 363 GGAIAIGHPLGATGARQFATLLSELKESGKKVGVTSMCI----GTGMGAASLVVA 413
>sp|P07871|THIKB_RAT 3-ketoacyl-CoA thiolase B, peroxisomal precursor (Beta-ketothiolase
B) (Acetyl-CoA acyltransferase B) (Peroxisomal
3-oxoacyl-CoA thiolase B)
Length = 424
Score = 48.5 bits (114), Expect = 7e-06
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +3
Query: 12 QSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSGGL 191
++GL ND + E+++ F++ L E LG+ P + +NP GG
Sbjct: 331 KAGLTVNDIDIFEINEAFASQALYCVEKLGI--PAEK----------------VNPLGGA 372
Query: 192 ISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLG-GAAFVAAY 350
I+ GHPLG TG Q V L L KR+ + A + +G G GAA V Y
Sbjct: 373 IALGHPLGCTGARQVVTLLNEL-----KRRGRRAYGVVSMCIGTGMGAAAVFEY 421
>sp|P21775|THIKA_RAT 3-ketoacyl-CoA thiolase A, peroxisomal precursor (Beta-ketothiolase
A) (Acetyl-CoA acyltransferase A) (Peroxisomal
3-oxoacyl-CoA thiolase A)
Length = 424
Score = 48.5 bits (114), Expect = 7e-06
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +3
Query: 12 QSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSGGL 191
++GL ND + E+++ F++ L E LG+ P + +NP GG
Sbjct: 331 KAGLTVNDIDIFEINEAFASQALYCVEKLGI--PAEK----------------VNPLGGA 372
Query: 192 ISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLG-GAAFVAAY 350
I+ GHPLG TG Q V L L KR+ + A + +G G GAA V Y
Sbjct: 373 IALGHPLGCTGARQVVTLLNEL-----KRRGRRAYGVVSMCIGTGMGAAAVFEY 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,946,581
Number of Sequences: 369166
Number of extensions: 1080748
Number of successful extensions: 2617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2594
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)