DrC_01140
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01140 (764 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q8WY41|NANO1_HUMAN Nanos homolog 1 (NOS-1) (EC_Rep1a) 89 2e-17 sp|Q80WY3|NANO1_MOUSE Nanos homolog 1 88 2e-17 sp|P60322|NANO2_MOUSE Nanos homolog 2 81 3e-15 sp|P60321|NANO2_HUMAN Nanos homolog 2 79 2e-14 sp|P25724|NANOS_DROME Nanos protein 79 2e-14 sp|P60324|NANO3_MOUSE Nanos homolog 3 74 4e-13 sp|P60323|NANO3_HUMAN Nanos homolog 3 70 8e-12 sp|Q8K9Z3|LSPA_BUCAP Lipoprotein signal peptidase (Prolipop... 31 3.2 sp|Q9TKS1|MATK_ABRPR Maturase K (Intron maturase) 31 4.2 sp|P32730|YLXP_BACSU Hypothetical protein ylxP (ORF5) 30 5.5
>sp|Q8WY41|NANO1_HUMAN Nanos homolog 1 (NOS-1) (EC_Rep1a) Length = 292 Score = 88.6 bits (218), Expect = 2e-17 Identities = 35/58 (60%), Positives = 46/58 (79%) Frame = +3 Query: 351 IELCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 524 +++CVFCRNN E +Y +H +K +G+V CPVLR YTCPLC ++GD AHTIKYCP+S Sbjct: 211 LQVCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLS 268
>sp|Q80WY3|NANO1_MOUSE Nanos homolog 1 Length = 267 Score = 88.2 bits (217), Expect = 2e-17 Identities = 35/58 (60%), Positives = 46/58 (79%) Frame = +3 Query: 351 IELCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 524 +++CVFCRNN E +Y +H +K +G+V CPVLR YTCPLC ++GD AHTIKYCP+S Sbjct: 186 LQVCVFCRNNKEAVALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLS 243
>sp|P60322|NANO2_MOUSE Nanos homolog 2 Length = 136 Score = 81.3 bits (199), Expect = 3e-15 Identities = 31/58 (53%), Positives = 44/58 (75%) Frame = +3 Query: 357 LCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPISSN 530 +C FC++N E +Y SH++K G V CP+LR+Y CPLC +TGD AHT+KYCP++S+ Sbjct: 60 ICNFCKHNGESRHVYTSHQLKTPEGVVVCPILRHYVCPLCGATGDQAHTLKYCPLNSS 117
>sp|P60321|NANO2_HUMAN Nanos homolog 2 Length = 138 Score = 78.6 bits (192), Expect = 2e-14 Identities = 30/56 (53%), Positives = 43/56 (76%) Frame = +3 Query: 357 LCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 524 LC FC++N E +Y SH++K +G V CP+LR+Y CP+C +TGD AHT+KYCP++ Sbjct: 62 LCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLN 117
>sp|P25724|NANOS_DROME Nanos protein Length = 401 Score = 78.6 bits (192), Expect = 2e-14 Identities = 32/53 (60%), Positives = 38/53 (71%) Frame = +3 Query: 360 CVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCP 518 CVFC NNNEP + SH V+D +V CP LR Y CP+C ++GD AHTIKYCP Sbjct: 319 CVFCENNNEPEAVINSHSVRDNFNRVLCPKLRTYVCPICGASGDSAHTIKYCP 371
>sp|P60324|NANO3_MOUSE Nanos homolog 3 Length = 178 Score = 73.9 bits (180), Expect = 4e-13 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Frame = +3 Query: 324 SNQIRKESHI---ELCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDF 494 S Q KES LC FC++N E +Y SH +KD G+V CP+LR+Y CP C +T + Sbjct: 42 SQQASKESSAAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATQEH 101 Query: 495 AHTIKYCPISS 527 AHT ++CP++S Sbjct: 102 AHTRRFCPLTS 112
>sp|P60323|NANO3_HUMAN Nanos homolog 3 Length = 173 Score = 69.7 bits (169), Expect = 8e-12 Identities = 27/56 (48%), Positives = 40/56 (71%) Frame = +3 Query: 357 LCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 524 LC FC++N E +Y SH +KD G+V CP+LR+Y CP C +T + AHT ++CP++ Sbjct: 57 LCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLT 112
>sp|Q8K9Z3|LSPA_BUCAP Lipoprotein signal peptidase (Prolipoprotein signal peptidase) (Signal peptidase II) (SPase II) Length = 156 Score = 31.2 bits (69), Expect = 3.2 Identities = 17/61 (27%), Positives = 32/61 (52%) Frame = +1 Query: 364 YFVEIIMNLLKCMLAIK*KI*MAKLHVLSYEIILVPYVTALVILLIQSNIVQFLQIHRKV 543 + + II+ ++K M+ K K K +LSY +IL + L+ + ++ F+ +H K Sbjct: 72 FSIIIILAIIKIMIKFKKK---DKNKILSYSLILAGAIGNLIDRINYGFVIDFIDLHFKS 128 Query: 544 W 546 W Sbjct: 129 W 129
>sp|Q9TKS1|MATK_ABRPR Maturase K (Intron maturase) Length = 508 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +1 Query: 292 HGLDYFIN*ELLIRFVKKAILNYAYFVEIIMNLLKCMLAI 411 H LDYF+N +L + V+ +L ++ +EI+M L + I Sbjct: 329 HFLDYFLNLQLNLSVVRSQMLQNSFLMEIVMKKLDTRVPI 368
>sp|P32730|YLXP_BACSU Hypothetical protein ylxP (ORF5) Length = 92 Score = 30.4 bits (67), Expect = 5.5 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 138 QKTVSKTDFTLLAEDDHDNVFRSDVKLSKELDRWVALLEAWPERHITLDRSTW 296 Q T +T F + A V S V+ KEL R +A ++++PE T+ R+ W Sbjct: 45 QDTWQRTSFGIAA------VSSSRVQTEKELQRVLAFIDSFPEIERTITRTEW 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,721,161
Number of Sequences: 369166
Number of extensions: 1505016
Number of successful extensions: 3401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3398
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
