Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_K04
(736 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WY41|NANO1_HUMAN Nanos homolog 1 (NOS-1) (EC_Rep1a) 89 2e-17
sp|Q80WY3|NANO1_MOUSE Nanos homolog 1 88 2e-17
sp|P60322|NANO2_MOUSE Nanos homolog 2 81 3e-15
sp|P60321|NANO2_HUMAN Nanos homolog 2 79 2e-14
sp|P25724|NANOS_DROME Nanos protein 79 2e-14
sp|P60324|NANO3_MOUSE Nanos homolog 3 74 4e-13
sp|P60323|NANO3_HUMAN Nanos homolog 3 70 8e-12
sp|Q8K9Z3|LSPA_BUCAP Lipoprotein signal peptidase (Prolipop... 31 3.9
sp|Q9TKS1|MATK_ABRPR Maturase K (Intron maturase) 31 3.9
sp|P32730|YLXP_BACSU Hypothetical protein ylxP (ORF5) 30 5.1
>sp|Q8WY41|NANO1_HUMAN Nanos homolog 1 (NOS-1) (EC_Rep1a)
Length = 292
Score = 88.6 bits (218), Expect = 2e-17
Identities = 35/58 (60%), Positives = 46/58 (79%)
Frame = +2
Query: 323 IELCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 496
+++CVFCRNN E +Y +H +K +G+V CPVLR YTCPLC ++GD AHTIKYCP+S
Sbjct: 211 LQVCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLS 268
>sp|Q80WY3|NANO1_MOUSE Nanos homolog 1
Length = 267
Score = 88.2 bits (217), Expect = 2e-17
Identities = 35/58 (60%), Positives = 46/58 (79%)
Frame = +2
Query: 323 IELCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 496
+++CVFCRNN E +Y +H +K +G+V CPVLR YTCPLC ++GD AHTIKYCP+S
Sbjct: 186 LQVCVFCRNNKEAVALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLS 243
>sp|P60322|NANO2_MOUSE Nanos homolog 2
Length = 136
Score = 81.3 bits (199), Expect = 3e-15
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = +2
Query: 329 LCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPISSN 502
+C FC++N E +Y SH++K G V CP+LR+Y CPLC +TGD AHT+KYCP++S+
Sbjct: 60 ICNFCKHNGESRHVYTSHQLKTPEGVVVCPILRHYVCPLCGATGDQAHTLKYCPLNSS 117
>sp|P60321|NANO2_HUMAN Nanos homolog 2
Length = 138
Score = 78.6 bits (192), Expect = 2e-14
Identities = 30/56 (53%), Positives = 43/56 (76%)
Frame = +2
Query: 329 LCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 496
LC FC++N E +Y SH++K +G V CP+LR+Y CP+C +TGD AHT+KYCP++
Sbjct: 62 LCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLN 117
>sp|P25724|NANOS_DROME Nanos protein
Length = 401
Score = 78.6 bits (192), Expect = 2e-14
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +2
Query: 332 CVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCP 490
CVFC NNNEP + SH V+D +V CP LR Y CP+C ++GD AHTIKYCP
Sbjct: 319 CVFCENNNEPEAVINSHSVRDNFNRVLCPKLRTYVCPICGASGDSAHTIKYCP 371
>sp|P60324|NANO3_MOUSE Nanos homolog 3
Length = 178
Score = 73.9 bits (180), Expect = 4e-13
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Frame = +2
Query: 296 SNQIRKESHI---ELCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDF 466
S Q KES LC FC++N E +Y SH +KD G+V CP+LR+Y CP C +T +
Sbjct: 42 SQQASKESSAAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATQEH 101
Query: 467 AHTIKYCPISS 499
AHT ++CP++S
Sbjct: 102 AHTRRFCPLTS 112
>sp|P60323|NANO3_HUMAN Nanos homolog 3
Length = 173
Score = 69.7 bits (169), Expect = 8e-12
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +2
Query: 329 LCVFCRNNNEPFEMYVSHKVKDLNGKVTCPVLRNYTCPLCNSTGDFAHTIKYCPIS 496
LC FC++N E +Y SH +KD G+V CP+LR+Y CP C +T + AHT ++CP++
Sbjct: 57 LCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLT 112
>sp|Q8K9Z3|LSPA_BUCAP Lipoprotein signal peptidase (Prolipoprotein signal peptidase)
(Signal peptidase II) (SPase II)
Length = 156
Score = 30.8 bits (68), Expect = 3.9
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 336 YFVEIIMNLLKCMLAIK*KI*MAKLLVLSYEIILVPYVTALVILLIQSNIVQFLQIHRKV 515
+ + II+ ++K M+ K K K +LSY +IL + L+ + ++ F+ +H K
Sbjct: 72 FSIIIILAIIKIMIKFKKK---DKNKILSYSLILAGAIGNLIDRINYGFVIDFIDLHFKS 128
Query: 516 W 518
W
Sbjct: 129 W 129
>sp|Q9TKS1|MATK_ABRPR Maturase K (Intron maturase)
Length = 508
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 264 HGLDYFIN*ELLIRFVKKAILNYAYFVEIIMNLLKCMLAI 383
H LDYF+N +L + V+ +L ++ +EI+M L + I
Sbjct: 329 HFLDYFLNLQLNLSVVRSQMLQNSFLMEIVMKKLDTRVPI 368
>sp|P32730|YLXP_BACSU Hypothetical protein ylxP (ORF5)
Length = 92
Score = 30.4 bits (67), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 110 QKTVSKTDFTLLAEDDHDNVFRSDVKLSKELDRWVALLEAWPERHITLDRSTW 268
Q T +T F + A V S V+ KEL R +A ++++PE T+ R+ W
Sbjct: 45 QDTWQRTSFGIAA------VSSSRVQTEKELQRVLAFIDSFPEIERTITRTEW 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,849,946
Number of Sequences: 369166
Number of extensions: 1413822
Number of successful extensions: 3225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3222
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)