Planaria EST Database

DrC_01071

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01071
         (518 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99732|LITF_HUMAN  Lipopolysaccharide-induced tumor necro...    31   1.5  
sp|Q8NGI9|OR5A2_HUMAN  Olfactory receptor 5A2                      30   4.5  
sp|Q09818|YAC4_SCHPO  Putative general negative regulator of...    29   7.7  

>sp|Q99732|LITF_HUMAN Lipopolysaccharide-induced tumor necrosis factor-alpha factor
           (LPS-induced TNF-alpha factor) (p53-induced protein 7)
          Length = 228

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 130 CPKCLEEIITTVKFRVGCQTWLFCLGIGIFCPLG 231
           CP C + I++ + +  G  TWL C   G  C LG
Sbjct: 96  CPSCNKMIVSQLSYNAGALTWLSC---GSLCLLG 126

>sp|Q8NGI9|OR5A2_HUMAN Olfactory receptor 5A2
          Length = 324

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 49  MDSQKSESMHIVTEKTIDFDIDEKSIVCPKCLEEIIT---TVKFRVGCQTWLFCLGIGIF 219
           MDS     M+         DI   S   PK L +IIT   T+ F VGC T  F     +F
Sbjct: 52  MDSHLHMPMYFFLSNLSFLDICYVSSTAPKMLSDIITEQKTISF-VGCATQYF-----VF 105

Query: 220 CPLG 231
           C +G
Sbjct: 106 CGMG 109

>sp|Q09818|YAC4_SCHPO Putative general negative regulator of transcription C16C9.04c
          Length = 489

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 112 DEKSIVCPKCLEEIITTVKFRVGCQTWLFCLGIGIFCPLGCCLIPFCLRECK-DVHHYCP 288
           DE  + CP C+EEI  + K    CQ           C    C   FC    K D++  CP
Sbjct: 12  DEDDMCCPLCMEEIDISDKNFKPCQ-----------CGYRVC--RFCWHHIKEDLNGRCP 58

Query: 289 KCDR 300
            C R
Sbjct: 59  ACRR 62

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,300,395
Number of Sequences: 369166
Number of extensions: 1043002
Number of successful extensions: 2802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2802
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01071

  1. Dr_sW_026_N20
  2. Dr_sW_010_M17