Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N20
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99732|LITF_HUMAN Lipopolysaccharide-induced tumor necro... 31 1.5
sp|Q8NGI9|OR5A2_HUMAN Olfactory receptor 5A2 30 4.4
sp|Q09818|YAC4_SCHPO Putative general negative regulator of... 29 7.6
sp|Q66JG9|Spre1_XENTR Sprouty-related, EVH1 domain containi... 28 9.9
>sp|Q99732|LITF_HUMAN Lipopolysaccharide-induced tumor necrosis factor-alpha factor
(LPS-induced TNF-alpha factor) (p53-induced protein 7)
Length = 228
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 130 CPKCLEEIITTVKFRVGCQTWLFCLGIGIFCPLG 231
CP C + I++ + + G TWL C G C LG
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSC---GSLCLLG 126
>sp|Q8NGI9|OR5A2_HUMAN Olfactory receptor 5A2
Length = 324
Score = 29.6 bits (65), Expect = 4.4
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 49 MDSEKSESMHIVTEKTIDFDIDEKSIVCPKCLEEIIT---TVKFRVGCQTWLFCLGIGIF 219
MDS M+ DI S PK L +IIT T+ F VGC T F +F
Sbjct: 52 MDSHLHMPMYFFLSNLSFLDICYVSSTAPKMLSDIITEQKTISF-VGCATQYF-----VF 105
Query: 220 CPLG 231
C +G
Sbjct: 106 CGMG 109
>sp|Q09818|YAC4_SCHPO Putative general negative regulator of transcription C16C9.04c
Length = 489
Score = 28.9 bits (63), Expect = 7.6
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 112 DEKSIVCPKCLEEIITTVKFRVGCQTWLFCLGIGIFCPLGCCLIPFCLRECK-DVHHYCP 288
DE + CP C+EEI + K CQ C C FC K D++ CP
Sbjct: 12 DEDDMCCPLCMEEIDISDKNFKPCQ-----------CGYRVC--RFCWHHIKEDLNGRCP 58
Query: 289 KCDR 300
C R
Sbjct: 59 ACRR 62
>sp|Q66JG9|Spre1_XENTR Sprouty-related, EVH1 domain containing protein 1 (Spred-1)
Length = 406
Score = 28.5 bits (62), Expect = 9.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 181 CQTWLFCLGIGIFCPLGCCLIPFCLRECKDVHHYCPKCDRYLGRYK 318
C WL + + P CC +P LR C HH C G++K
Sbjct: 363 CLRWLALITLSFIAPCMCCYLP--LRAC---HHCGEMCGCCGGKHK 403
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,071,155
Number of Sequences: 369166
Number of extensions: 1038710
Number of successful extensions: 2845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2845
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)