Planaria EST Database

DrC_01069

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01069
         (737 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZQ73|CAND2_MOUSE  Cullin-associated NEDD8-dissociated p...    31   3.9  
sp|Q9R0L4|CAND2_RAT  Cullin-associated NEDD8-dissociated pro...    31   3.9  
sp|Q56826|FLIC_XENNE  Flagellin                                    30   8.8  

>sp|Q6ZQ73|CAND2_MOUSE Cullin-associated NEDD8-dissociated protein 2 (Cullin-associated
           and neddylation-dissociated protein 2) (p120 CAND2)
           (TBP-interacting protein TIP120B) (TBP-interacting
           protein of 120 kDa B)
          Length = 1235

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 254 TKVSLSHLRKLCHK---VEFISHIIDRLEGQPNAESKAMISLLVQ 129
           T V+L HL   C     VE   H++DRL G     S A I  L+Q
Sbjct: 195 TVVALGHLAAACSTDLFVELADHLVDRLPGPRAPASPAAIRTLIQ 239

>sp|Q9R0L4|CAND2_RAT Cullin-associated NEDD8-dissociated protein 2 (Cullin-associated
           and neddylation-dissociated protein 2) (p120 CAND2)
           (TBP-interacting protein TIP120B) (TBP-interacting
           protein of 120 kDa B) (TBP-interacting protein b)
          Length = 1273

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 254 TKVSLSHLRKLCHK---VEFISHIIDRLEGQPNAESKAMISLLVQ 129
           T V+L HL   C     VE   H++DRL G     S A I  L+Q
Sbjct: 233 TVVALGHLAAACSTDLFVELADHLVDRLPGPRAPASPAAIRTLIQ 277

>sp|Q56826|FLIC_XENNE Flagellin
          Length = 313

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = -1

Query: 311 NQ*HDNIQPIREK*VDSHLTKVSLSHLRKLCHKVEFISHIIDRLEGQPNAESKAMISLLV 132
           N+ ++N+Q IRE  V S     S S L  +  +V      IDR+  Q       +++  V
Sbjct: 83  NEINNNLQRIRELTVQSENGSNSKSDLDSIQKEVTQRLEEIDRISTQTQFNGIKVLNGDV 142

Query: 131 QEIKTSIGGNGN 96
            E+K  +G N N
Sbjct: 143 TEMKIQVGANDN 154

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,655,087
Number of Sequences: 369166
Number of extensions: 1165163
Number of successful extensions: 2156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01069

  1. Dr_sW_026_N05
  2. Dr_sW_023_B09
  3. Dr_sW_014_G09
  4. Dr_sW_024_G08