Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N05
(732 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6ZQ73|CAND2_MOUSE Cullin-associated NEDD8-dissociated p... 31 3.9
sp|Q9R0L4|CAND2_RAT Cullin-associated NEDD8-dissociated pro... 31 3.9
sp|Q56826|FLIC_XENNE Flagellin 30 8.6
>sp|Q6ZQ73|CAND2_MOUSE Cullin-associated NEDD8-dissociated protein 2 (Cullin-associated
and neddylation-dissociated protein 2) (p120 CAND2)
(TBP-interacting protein TIP120B) (TBP-interacting
protein of 120 kDa B)
Length = 1235
Score = 30.8 bits (68), Expect = 3.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 479 TKVSLSHLRKLCHK---VEFISHIIDRLEGQPNAESKAMISLLVQ 604
T V+L HL C VE H++DRL G S A I L+Q
Sbjct: 195 TVVALGHLAAACSTDLFVELADHLVDRLPGPRAPASPAAIRTLIQ 239
>sp|Q9R0L4|CAND2_RAT Cullin-associated NEDD8-dissociated protein 2 (Cullin-associated
and neddylation-dissociated protein 2) (p120 CAND2)
(TBP-interacting protein TIP120B) (TBP-interacting
protein of 120 kDa B) (TBP-interacting protein b)
Length = 1273
Score = 30.8 bits (68), Expect = 3.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 479 TKVSLSHLRKLCHK---VEFISHIIDRLEGQPNAESKAMISLLVQ 604
T V+L HL C VE H++DRL G S A I L+Q
Sbjct: 233 TVVALGHLAAACSTDLFVELADHLVDRLPGPRAPASPAAIRTLIQ 277
>sp|Q56826|FLIC_XENNE Flagellin
Length = 313
Score = 29.6 bits (65), Expect = 8.6
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 422 NQ*HDNIQPIREK*VDSHLTKVSLSHLRKLCHKVEFISHIIDRLEGQPNAESKAMISLLV 601
N+ ++N+Q IRE V S S S L + +V IDR+ Q +++ V
Sbjct: 83 NEINNNLQRIRELTVQSENGSNSKSDLDSIQKEVTQRLEEIDRISTQTQFNGIKVLNGDV 142
Query: 602 QEIKTSIGGNGN 637
E+K +G N N
Sbjct: 143 TEMKIQVGANDN 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,017,449
Number of Sequences: 369166
Number of extensions: 1155027
Number of successful extensions: 2150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)