Planaria EST Database

DrC_01049

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01049
         (450 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41001|TOP2_PLAFK  DNA topoisomerase 2 (DNA topoisomerase...    30   2.5  
sp|P19696|HEMA_IADCZ  Hemagglutinin precursor [Contains: Hem...    29   5.5  
sp|P19698|HEMA_IAGRE  Hemagglutinin precursor [Contains: Hem...    29   5.5  
sp|P00363|FRDA_ECOLI  Fumarate reductase flavoprotein subunit      28   7.2  
sp|P03443|HEMA_IADA1  Hemagglutinin precursor [Contains: Hem...    28   7.2  
sp|P19695|HEMA_IACKA  Hemagglutinin precursor [Contains: Hem...    28   7.2  
sp|P19701|HEMA_IASE2  Hemagglutinin precursor [Contains: Hem...    28   7.2  
sp|P19694|HEMA_IABUD  Hemagglutinin precursor [Contains: Hem...    28   9.4  

>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase II)
          Length = 1398

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -2

Query: 239 HRSKF-WTVLLKYSNIPLYYYRNKRE**IVWQHRFLLGTPLSH--KDLSNPNLEN*QLTQ 69
           H+  F WT      +I + + + + E   +W   F+LG+ + H  KDLS  +  N     
Sbjct: 670 HKIMFLWTGDRDGDSIDMAFSKKRIEDRKLWLQNFILGSYVDHKEKDLSYYDFVN----- 724

Query: 68  KKQLIIYSRY*T 33
            K+LI YSRY T
Sbjct: 725 -KELIYYSRYDT 735

>sp|P19696|HEMA_IADCZ Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
           Hemagglutinin HA2 chain]
          Length = 564

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 190 YIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
           +++IA N S   +GN V  + HH     + ++TL
Sbjct: 8   FLLIAENSSQNYTGNPVICMGHHAVANGTMVKTL 41

>sp|P19698|HEMA_IAGRE Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
           Hemagglutinin HA2 chain]
          Length = 564

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 190 YIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
           +++IA N S   +GN V  + HH     + ++TL
Sbjct: 8   FLLIAENSSQNYTGNPVICMGHHAVANGTMVKTL 41

>sp|P00363|FRDA_ECOLI Fumarate reductase flavoprotein subunit
          Length = 602

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 196 FHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQ 95
           +H+      G      ++V Y  HHCPT+ +Q++
Sbjct: 65  YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLE 98

>sp|P03443|HEMA_IADA1 Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
           Hemagglutinin HA2 chain]
          Length = 564

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 199 TFHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
           T  +++IA   S   +GN V  L HH  +  + ++TL
Sbjct: 5   TILFLLIAEGSSQNYTGNPVICLGHHAVSNGTMVKTL 41

>sp|P19695|HEMA_IACKA Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
           Hemagglutinin HA2 chain]
          Length = 564

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 199 TFHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
           T  +++IA   S   +GN V  L HH  +  + ++TL
Sbjct: 5   TILFLLIAEGSSQNYTGNPVICLGHHAVSNGTMVKTL 41

>sp|P19701|HEMA_IASE2 Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
           Hemagglutinin HA2 chain]
          Length = 564

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 199 TFHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
           T  +++IA   S   +GN V  L HH  +  + ++TL
Sbjct: 5   TILFLLIAEGSSQNYTGNPVICLGHHAVSNGTMVKTL 41

>sp|P19694|HEMA_IABUD Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
           Hemagglutinin HA2 chain]
          Length = 564

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 190 YIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
           ++++A N S   +GN V  + HH     + ++TL
Sbjct: 8   FLLVAENSSQSYTGNPVICMGHHSVANGTMVKTL 41

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,556,086
Number of Sequences: 369166
Number of extensions: 729961
Number of successful extensions: 1651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01049

  1. Dr_sW_026_H01
  2. Dr_sW_022_P08
  3. Dr_sW_023_E21
  4. Dr_sW_008_I18
  5. Dr_sW_017_A03
  6. Dr_sW_007_B05
  7. Dr_sW_023_P21
  8. Dr_sW_006_M23
  9. Dr_sW_006_N07