Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_H01
(444 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase... 30 2.4
sp|P19696|HEMA_IADCZ Hemagglutinin precursor [Contains: Hem... 29 5.3
sp|P19698|HEMA_IAGRE Hemagglutinin precursor [Contains: Hem... 29 5.3
sp|P00363|FRDA_ECOLI Fumarate reductase flavoprotein subunit 28 6.9
sp|P03443|HEMA_IADA1 Hemagglutinin precursor [Contains: Hem... 28 6.9
sp|P19695|HEMA_IACKA Hemagglutinin precursor [Contains: Hem... 28 6.9
sp|P19701|HEMA_IASE2 Hemagglutinin precursor [Contains: Hem... 28 6.9
sp|P19694|HEMA_IABUD Hemagglutinin precursor [Contains: Hem... 28 9.0
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase II)
Length = 1398
Score = 30.0 bits (66), Expect = 2.4
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -2
Query: 239 HRSKF-WTVLLKYSNIPLYYYRNKRE**IVWQHRFLLGTPLSH--KDLSNPNLEN*QLTQ 69
H+ F WT +I + + + + E +W F+LG+ + H KDLS + N
Sbjct: 670 HKIMFLWTGDRDGDSIDMAFSKKRIEDRKLWLQNFILGSYVDHKEKDLSYYDFVN----- 724
Query: 68 KKQLIIYSRY*T 33
K+LI YSRY T
Sbjct: 725 -KELIYYSRYDT 735
>sp|P19696|HEMA_IADCZ Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
Hemagglutinin HA2 chain]
Length = 564
Score = 28.9 bits (63), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 190 YIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
+++IA N S +GN V + HH + ++TL
Sbjct: 8 FLLIAENSSQNYTGNPVICMGHHAVANGTMVKTL 41
>sp|P19698|HEMA_IAGRE Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
Hemagglutinin HA2 chain]
Length = 564
Score = 28.9 bits (63), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 190 YIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
+++IA N S +GN V + HH + ++TL
Sbjct: 8 FLLIAENSSQNYTGNPVICMGHHAVANGTMVKTL 41
>sp|P00363|FRDA_ECOLI Fumarate reductase flavoprotein subunit
Length = 602
Score = 28.5 bits (62), Expect = 6.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 196 FHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQ 95
+H+ G ++V Y HHCPT+ +Q++
Sbjct: 65 YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLE 98
>sp|P03443|HEMA_IADA1 Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
Hemagglutinin HA2 chain]
Length = 564
Score = 28.5 bits (62), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 199 TFHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
T +++IA S +GN V L HH + + ++TL
Sbjct: 5 TILFLLIAEGSSQNYTGNPVICLGHHAVSNGTMVKTL 41
>sp|P19695|HEMA_IACKA Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
Hemagglutinin HA2 chain]
Length = 564
Score = 28.5 bits (62), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 199 TFHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
T +++IA S +GN V L HH + + ++TL
Sbjct: 5 TILFLLIAEGSSQNYTGNPVICLGHHAVSNGTMVKTL 41
>sp|P19701|HEMA_IASE2 Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
Hemagglutinin HA2 chain]
Length = 564
Score = 28.5 bits (62), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 199 TFHYIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
T +++IA S +GN V L HH + + ++TL
Sbjct: 5 TILFLLIAEGSSQNYTGNPVICLGHHAVSNGTMVKTL 41
>sp|P19694|HEMA_IABUD Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
Hemagglutinin HA2 chain]
Length = 564
Score = 28.1 bits (61), Expect = 9.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 190 YIIIATNGSNELSGNIVFYLAHHCPTKTSQIQTL 89
++++A N S +GN V + HH + ++TL
Sbjct: 8 FLLVAENSSQSYTGNPVICMGHHSVANGTMVKTL 41
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,952,043
Number of Sequences: 369166
Number of extensions: 721293
Number of successful extensions: 1625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)