Planaria EST Database


DrC_01039

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01039
         (324 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14061|COX17_HUMAN  Cytochrome c oxidase copper chaperone       49   5e-06
sp|P56394|COX17_MOUSE  Cytochrome c oxidase copper chaperone       49   5e-06
sp|Q6J3Q7|COX17_CANFA  Cytochrome c oxidase copper chaperone       49   5e-06
sp|P81045|COX17_PIG  Cytochrome c oxidase copper chaperone (...    49   5e-06
sp|Q12287|COX17_YEAST  Cytochrome c oxidase copper chaperone       34   0.12 
sp|P80074|MYB1_PHYPA  Myb-related protein Pp1                      32   0.34 
sp|P15362|P69_MYCHR  Transport system permease protein p69         32   0.59 
sp|P05789|EREB_ECOLI  Erythromycin esterase type II                30   1.7  
sp|Q9HFU4|MANA_CRYNE  Mannose-6-phosphate isomerase (Phospho...    29   3.8  
sp|P45792|TAPB_AERHY  Type IV pilus assembly protein tapB          29   3.8  
>sp|Q14061|COX17_HUMAN Cytochrome c oxidase copper chaperone
          Length = 63

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 131 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 238
           ET+K RD CI   GEE+C  L+ AHKECM+ +GF I
Sbjct: 28  ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63
>sp|P56394|COX17_MOUSE Cytochrome c oxidase copper chaperone
          Length = 63

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 131 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 238
           ET+K RD CI   GEE+C  L+ AHKECM+ +GF I
Sbjct: 28  ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63
>sp|Q6J3Q7|COX17_CANFA Cytochrome c oxidase copper chaperone
          Length = 63

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 131 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 238
           ET+K RD CI   GEE+C  L+ AHKECM+ +GF I
Sbjct: 28  ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63
>sp|P81045|COX17_PIG Cytochrome c oxidase copper chaperone (Dopuin)
          Length = 62

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 131 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 238
           ET+K RD CI   GEE+C  L+ AHKECM+ +GF I
Sbjct: 27  ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 62
>sp|Q12287|COX17_YEAST Cytochrome c oxidase copper chaperone
          Length = 69

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 137 RKPRDECIAAFGE--ENCQELMLAHKECMKKMGFDI 238
           ++ RD CI   G+  E C+E +  +KECMK  GF++
Sbjct: 30  KEERDTCILFNGQDSEKCKEFIEKYKECMKGYGFEV 65
>sp|P80074|MYB1_PHYPA Myb-related protein Pp1
          Length = 449

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 277 H*INVS-NTRILQLNIKSHF-FHTFFMCKHQFLTIFFTKSCYTFITRFTSFRASTAWFTF 104
           H  N+S N+ + Q+ + ++  FH+  +C       +F +S  T I     F      F F
Sbjct: 371 HSFNLSVNSMVNQVGVPNNIPFHSLIICVESIFVAYFRRSRCTSIANLHMFFV----FRF 426

Query: 103 WFVCLTLSFHFYR 65
           +F     SF FYR
Sbjct: 427 YFYLFYFSFDFYR 439
>sp|P15362|P69_MYCHR Transport system permease protein p69
          Length = 580

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 24/86 (27%), Positives = 39/86 (45%)
 Frame = -3

Query: 307 YIFIKYYLTGH*INVSNTRILQLNIKSHFFHTFFMCKHQFLTIFFTKSCYTFITRFTSFR 128
           +IF  +Y     IN  +TRI   N+K  F  + +  K+   T++     Y F+T      
Sbjct: 34  FIF-SFYSLFQPINYGSTRIFTKNLKELFTFSNYSKKYPSWTLWQLSWYYMFLTIRYCAL 92

Query: 127 ASTAWFTFWFVCLTLSFHFYRFTF*R 50
            +T  F F F    +S +F ++ F R
Sbjct: 93  GTTLGFIFAFFTSFVSSNFQKYKFIR 118
>sp|P05789|EREB_ECOLI Erythromycin esterase type II
          Length = 419

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 265 VSNTRILQLNIKSHFFHTFFMCKHQFLTIFFTKSCYT 155
           + +TR++ L   SHF   FF+ +H  L  F     +T
Sbjct: 33  IGDTRVVALGENSHFIKEFFLLRHTLLRFFIEDLGFT 69
>sp|Q9HFU4|MANA_CRYNE Mannose-6-phosphate isomerase (Phosphomannose isomerase) (PMI)
           (Phosphohexomutase)
          Length = 434

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = -2

Query: 230 IPFFSYILYVQASI-----PDNFLHQKLLYIHHEVYEFPGKHSMVYILVCLSHSFLPFLP 66
           +PF   +L +  ++     PD  L +KL     +VY+ P     + I +    +FL FLP
Sbjct: 93  LPFLFKVLSIGTALSIQAHPDKPLAKKLFDEKPDVYKDPNHKPEMAIALTPFLAFLNFLP 152

Query: 65  IHI--LKTINYPSYKIYIDS 12
           + +  L  +  P  + ++DS
Sbjct: 153 LSVLLLHLLTVPELQEFVDS 172
>sp|P45792|TAPB_AERHY Type IV pilus assembly protein tapB
          Length = 568

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 239 KYQIPFFSYILYVQASIPDNFLHQKLLYIHHEVYEFPGKHSM 114
           +Y +P      +  A IP  +L+QKL+  HH +  +   H++
Sbjct: 60  EYGVPLLDLAAFDLAEIPQKYLNQKLIEKHHVLPIYTQGHTL 101
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,673,785
Number of Sequences: 369166
Number of extensions: 668647
Number of successful extensions: 1566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01039

  1. Dr_sW_026_D20
  2. Dr_sW_022_H17