Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H17
(274 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14061|COX17_HUMAN Cytochrome c oxidase copper chaperone 49 5e-06
sp|P56394|COX17_MOUSE Cytochrome c oxidase copper chaperone 49 5e-06
sp|Q6J3Q7|COX17_CANFA Cytochrome c oxidase copper chaperone 49 5e-06
sp|P81045|COX17_PIG Cytochrome c oxidase copper chaperone (... 49 5e-06
sp|Q12287|COX17_YEAST Cytochrome c oxidase copper chaperone 34 0.12
sp|P80074|MYB1_PHYPA Myb-related protein Pp1 32 0.35
sp|P15362|P69_MYCHR Transport system permease protein p69 31 0.78
sp|P05789|EREB_ECOLI Erythromycin esterase type II 30 1.7
sp|P45792|TAPB_AERHY Type IV pilus assembly protein tapB 29 3.9
sp|Q9CY27|GPSN2_MOUSE Synaptic glycoprotein SC2 28 5.1
>sp|Q14061|COX17_HUMAN Cytochrome c oxidase copper chaperone
Length = 63
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 81 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 188
ET+K RD CI GEE+C L+ AHKECM+ +GF I
Sbjct: 28 ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63
>sp|P56394|COX17_MOUSE Cytochrome c oxidase copper chaperone
Length = 63
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 81 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 188
ET+K RD CI GEE+C L+ AHKECM+ +GF I
Sbjct: 28 ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63
>sp|Q6J3Q7|COX17_CANFA Cytochrome c oxidase copper chaperone
Length = 63
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 81 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 188
ET+K RD CI GEE+C L+ AHKECM+ +GF I
Sbjct: 28 ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63
>sp|P81045|COX17_PIG Cytochrome c oxidase copper chaperone (Dopuin)
Length = 62
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 81 ETRKPRDECIAAFGEENCQELMLAHKECMKKMGFDI 188
ET+K RD CI GEE+C L+ AHKECM+ +GF I
Sbjct: 27 ETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 62
>sp|Q12287|COX17_YEAST Cytochrome c oxidase copper chaperone
Length = 69
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 87 RKPRDECIAAFGE--ENCQELMLAHKECMKKMGFDI 188
++ RD CI G+ E C+E + +KECMK GF++
Sbjct: 30 KEERDTCILFNGQDSEKCKEFIEKYKECMKGYGFEV 65
>sp|P80074|MYB1_PHYPA Myb-related protein Pp1
Length = 449
Score = 32.3 bits (72), Expect = 0.35
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 227 H*INVS-NTRILQLNIKSHF-FHTFFMCKHQFLTIFFTKSCYTFITRFTSFRASTAWFTF 54
H N+S N+ + Q+ + ++ FH+ +C +F +S T I F F F
Sbjct: 371 HSFNLSVNSMVNQVGVPNNIPFHSLIICVESIFVAYFRRSRCTSIANLHMFFV----FRF 426
Query: 53 WFVCLTLSFHFYR 15
+F SF FYR
Sbjct: 427 YFYLFYFSFDFYR 439
>sp|P15362|P69_MYCHR Transport system permease protein p69
Length = 580
Score = 31.2 bits (69), Expect = 0.78
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = -3
Query: 257 YIFIKYYLTGH*INVSNTRILQLNIKSHFFHTFFMCKHQFLTIFFTKSCYTFITRFTSFR 78
+IF +Y IN +TRI N+K F + + K+ T++ Y F+T
Sbjct: 34 FIF-SFYSLFQPINYGSTRIFTKNLKELFTFSNYSKKYPSWTLWQLSWYYMFLTIRYCAL 92
Query: 77 ASTAWFTFWFVCLTLSFHFYRFTF 6
+T F F F +S +F ++ F
Sbjct: 93 GTTLGFIFAFFTSFVSSNFQKYKF 116
>sp|P05789|EREB_ECOLI Erythromycin esterase type II
Length = 419
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 215 VSNTRILQLNIKSHFFHTFFMCKHQFLTIFFTKSCYT 105
+ +TR++ L SHF FF+ +H L F +T
Sbjct: 33 IGDTRVVALGENSHFIKEFFLLRHTLLRFFIEDLGFT 69
>sp|P45792|TAPB_AERHY Type IV pilus assembly protein tapB
Length = 568
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 189 KYQIPFFSYILYVQASIPDNFLHQKLLYIHHEVYEFPGKHSM 64
+Y +P + A IP +L+QKL+ HH + + H++
Sbjct: 60 EYGVPLLDLAAFDLAEIPQKYLNQKLIEKHHVLPIYTQGHTL 101
>sp|Q9CY27|GPSN2_MOUSE Synaptic glycoprotein SC2
Length = 308
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 192 TKYQIPFFSYILYVQASIPDNFLHQKLLYIHHEVYEFPGKHSMVYILVCLSHSF 31
T+Y P F Y+L+ + ++ +I+ Y+F V L C+ HSF
Sbjct: 93 TEYAGPLFIYLLF----------YFRVPFIYGRKYDFTSSRHTVVHLACMCHSF 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,465,679
Number of Sequences: 369166
Number of extensions: 524433
Number of successful extensions: 1250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)