Planarian EST Database

DrC_01036

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01036 CAAAGATAATAATACCAAATAGTAGTGCTGGATTACTTATTGGAAAAGAAGGAGAAACCA TTAACGATATTAAAAAATCTACCGGTGCATTCATTCAAGTTTCTCCAAAATCCAATAATC GACAATTTCTTGAGCGATATGTCTTAGTTATGGGAGATTCTCATCAATGTCATGAAGCTA CGAAAAAAATCATTAATAAAGTAGTTGAGGACACAAAACTATGCAGTTTTCCAAATATTA ACTATAATGAAATTATAAATGCTACTTCATACACTATTCCAGATTACTTTGGTGTTCCTA TTGGAACAACACCATACAATCATACAAATTCATTTGAAAATTCAACTTTTTCATATTCAG GTAATAATTTTCATATGAATTCAAATCAAAATAATCGAAATTACGGATATTACACACCAG GAACAAATTCACACTTTCCCGTTTCTAGATCATTGACGACATCATTTTCGCAAATGGATT ATATAGCAAGTGATTCATCTCACGGAATTACAAGAACACTTGAAGTTAATGAAACGTATA TAGGAGCAATTCTTGGTGCCAAAGGGAGATCAATTGTGGAACTACAAGAAGTTACCGACA CAAATATTAAAGTATCAAAGAAGCCAACTGAAAATTCAGATAAAAATAACAAAAGAATTG TAACAATAACAGGTCTGTATGAGAATGTTTCAAAGGCCTATTTGTTAATCAATGATAAAA TTCAACTTGAACAAGCTAGACGAGCAATGGCTTCGCAAGAAACTGATTTAAGTGAAAGCT GAAATCAGAAATAAGAAATCATCTGATTTATTATTATGATATTTAATGTGATAGTTTATT AATGGCAGTGAAAGAGGCATGTAGTTTTTTTTTGAAAGGGACAATAATGAAATGG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01036
         (895 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UNW9|NOVA2_HUMAN  RNA-binding protein Nova-2 (Neuro-onc...    73   9e-13
sp|Q80WA4|NOVA1_RAT  RNA-binding protein Nova-1 (Neuro-oncol...    71   4e-12
sp|Q9JKN6|NOVA1_MOUSE  RNA-binding protein Nova-1 (Neuro-onc...    70   6e-12
sp|P51513|NOVA1_HUMAN  RNA-binding protein Nova-1 (Neuro-onc...    70   8e-12
sp|P57722|PCBP3_MOUSE  Poly(rC)-binding protein 3 (Alpha-CP3)      64   6e-10
sp|P57721|PCBP3_HUMAN  Poly(rC)-binding protein 3 (Alpha-CP3)      64   6e-10
sp|Q61990|PCBP2_MOUSE  Poly(rC)-binding protein 2 (Alpha-CP2...    60   8e-09
sp|P60335|PCBP1_MOUSE  Poly(rC)-binding protein 1 (Alpha-CP1...    59   2e-08
sp|Q15366|PCBP2_HUMAN  Poly(rC)-binding protein 2 (Alpha-CP2...    57   5e-08
sp|P57723|PCBP4_HUMAN  Poly(rC)-binding protein 4 (Alpha-CP4)      52   3e-06

>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 (Neuro-oncological ventral antigen 2)
           (Astrocytic NOVA1-like RNA-binding protein)
          Length = 492

 Score = 73.2 bits (178), Expect = 9e-13
 Identities = 36/93 (38%), Positives = 55/93 (59%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           K+I+PNS+AGL+IGK G T+  + + +GA++Q+S K       ER V V G+  Q H+A 
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAV 193

Query: 183 KKIINKVVEDTKLCSFPNINYNEIINATSYTIP 281
             I+ KV ED +  S  NI+Y  +    + + P
Sbjct: 194 SAIVQKVQEDPQSSSCLNISYANVAGPVANSNP 226


 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 35/99 (35%), Positives = 54/99 (54%)
 Frame = +3

Query: 465 FSQMDYIASDSSHGITRTLEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDK 644
           F   + +A++S+  +   + V E  +GAILG  G+++VE QE+T   I++SKK       
Sbjct: 394 FLTAEKLAAESAKELVE-IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGT 452

Query: 645 NNKRIVTITGLYENVSKAYLLINDKIQLEQARRAMASQE 761
            N+R VTITG       A  LI+ ++  EQ  RA   Q+
Sbjct: 453 RNRR-VTITGSPAATQAAQYLISQRVTYEQGVRASNPQK 490


 Score = 43.5 bits (101), Expect = 8e-04
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS-PKSNNRQFLERYVLVMGDSHQCHEA 179
           K++IP+ +AG +IGK G+TI  ++K TGA I++S  K       ER  LV G +   +  
Sbjct: 36  KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 95

Query: 180 TKKIINKVVEDTKLCSFPNI 239
              I  KV E  +  + P +
Sbjct: 96  HSFIAEKVREIPQAMTKPEV 115


 Score = 33.5 bits (75), Expect = 0.82
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPK 110
           +I +P +  G ++GK G+T+ + ++ TGA IQ+S K
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 445


 Score = 32.7 bits (73), Expect = 1.4
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +3

Query: 519 LEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKA 698
           L V  +  G I+G  G ++  + E +   +++S+KP        +R+VT++G  E V KA
Sbjct: 135 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKP--EGINLQERVVTVSGEPEQVHKA 192

Query: 699 YLLINDKIQ 725
              I  K+Q
Sbjct: 193 VSAIVQKVQ 201

>sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Neuro-oncological ventral antigen 1)
          Length = 474

 Score = 71.2 bits (173), Expect = 4e-12
 Identities = 44/126 (34%), Positives = 67/126 (53%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           KII+PNS+AGL+IGK G T+  I + +GA++Q+S K +     ER V V G+  Q  +A 
Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 209

Query: 183 KKIINKVVEDTKLCSFPNINYNEIINATSYTIPDYFGVPIGTTPYNHTNSFENSTFSYSG 362
           + II K+ ED +  S  NI+Y  +    + + P  F       PY +T     +  + +G
Sbjct: 210 ELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGF-------PYANTAEVLPTAAAAAG 262

Query: 363 NNFHMN 380
              H N
Sbjct: 263 LLGHAN 268


 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 38/110 (34%), Positives = 54/110 (49%)
 Frame = +3

Query: 414 TPGTNSHFPVSRSLTTSFSQMDYIASDSSHGITRTLEVNETYIGAILGAKGRSIVELQEV 593
           T  TN +F  +  L  S       ++D S  +   + V E  +GAILG  G+++VE QE+
Sbjct: 367 TAATNGYFGAASPLAASAILGTEKSTDGSKDVVE-IAVPENLVGAILGKGGKTLVEYQEL 425

Query: 594 TDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKAYLLINDKIQLEQARR 743
           T   I++SKK        N++ VTITG       A  LI  +I  EQ  R
Sbjct: 426 TGARIQISKKGEFVPGTRNRK-VTITGTPAATQAAQYLITQRITYEQGVR 474


 Score = 39.7 bits (91), Expect = 0.011
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS-PKSNNRQFLERYVLVMGDSHQCHEA 179
           K++IP+ +AG +IGK G+TI  ++K TGA I++S  K       ER  L+ G     +  
Sbjct: 52  KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 111

Query: 180 TKKIINKVVE 209
              I  K+ E
Sbjct: 112 HGFIAEKIRE 121


 Score = 33.5 bits (75), Expect = 0.82
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPK 110
           +I +P +  G ++GK G+T+ + ++ TGA IQ+S K
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 435


 Score = 32.3 bits (72), Expect = 1.8
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = +3

Query: 543 GAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKAYLLINDKI 722
           G I+G  G ++  + E +   +++S+KP  +     +R+VT++G  E   KA  LI  KI
Sbjct: 159 GLIIGKGGATVKAIMEQSGAWVQLSQKP--DGINLQERVVTVSGEPEQNRKAVELIIQKI 216

Query: 723 Q 725
           Q
Sbjct: 217 Q 217

>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 (Neuro-oncological ventral antigen 1)
           (Ventral neuron-specific protein 1)
          Length = 493

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 40/103 (38%), Positives = 59/103 (57%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           KII+PNS+AGL+IGK G T+  I + +GA++Q+S K +     ER V V G+  Q  +A 
Sbjct: 161 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 220

Query: 183 KKIINKVVEDTKLCSFPNINYNEIINATSYTIPDYFGVPIGTT 311
           + II K+ ED +  S  NI+Y  +    + + P   G P   T
Sbjct: 221 ELIIQKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPYANT 261


 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 40/116 (34%), Positives = 57/116 (49%)
 Frame = +3

Query: 414 TPGTNSHFPVSRSLTTSFSQMDYIASDSSHGITRTLEVNETYIGAILGAKGRSIVELQEV 593
           T  TN +F  +  L  S       ++D S  +   + V E  +GAILG  G+++VE QE+
Sbjct: 378 TAATNGYFGAASPLAASAILGTEKSTDGSKDVVE-IAVPENLVGAILGKGGKTLVEYQEL 436

Query: 594 TDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKAYLLINDKIQLEQARRAMASQE 761
           T   I++SKK        N++ VTITG       A  LI  +I  EQ  RA   Q+
Sbjct: 437 TGARIQISKKGEFVPGTRNRK-VTITGTPAATQAAQYLITQRITYEQGVRAANPQK 491


 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 4/245 (1%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS-PKSNNRQFLERYVLVMGDSHQCHEA 179
           K++IP+ +AG +IGK G+TI  ++K TGA I++S  K       ER  L+ G     +  
Sbjct: 39  KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 98

Query: 180 TKKIINKVVEDTKLCSFPNINYNE---IINATSYTIPDYFGVPIGTTPYNHTNSFENSTF 350
              I  K+ E  +     N+   E   I+   +   PD     + +              
Sbjct: 99  HGFIAEKIREMPQ-----NVAKTEPVSILQPQTTVNPDRIKQTLPS-------------- 139

Query: 351 SYSGNNFHMNSNQNNRNYGYYTPGTNSHFPVSRSLTTSFSQMDYIASDSSHGITRTLEVN 530
                                +P T    P     T+  +Q+  I  +S+ G+       
Sbjct: 140 ---------------------SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGL------- 171

Query: 531 ETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKAYLLI 710
                 I+G  G ++  + E +   +++S+KP  +     +R+VT++G  E   KA  LI
Sbjct: 172 ------IIGKGGATVKAIMEQSGAWVQLSQKP--DGINLQERVVTVSGEPEQNRKAVELI 223

Query: 711 NDKIQ 725
             KIQ
Sbjct: 224 IQKIQ 228


 Score = 33.5 bits (75), Expect = 0.82
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPK 110
           +I +P +  G ++GK G+T+ + ++ TGA IQ+S K
Sbjct: 411 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 446

>sp|P51513|NOVA1_HUMAN RNA-binding protein Nova-1 (Neuro-oncological ventral antigen 1)
           (Onconeural ventral antigen 1) (Paraneoplastic Ri
           antigen) (Ventral neuron-specific protein 1)
          Length = 510

 Score = 70.1 bits (170), Expect = 8e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           KII+PNS+AGL+IGK G T+  + + +GA++Q+S K +     ER V V G+  Q  +A 
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 237

Query: 183 KKIINKVVEDTKLCSFPNINYNEIINATSYTIPDYFGVPIGTT 311
           + II K+ ED +  S  NI+Y  +    + + P   G P   T
Sbjct: 238 ELIIQKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPYANT 278


 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 40/116 (34%), Positives = 57/116 (49%)
 Frame = +3

Query: 414 TPGTNSHFPVSRSLTTSFSQMDYIASDSSHGITRTLEVNETYIGAILGAKGRSIVELQEV 593
           T  TN +F  +  L  S       ++D S  +   + V E  +GAILG  G+++VE QE+
Sbjct: 395 TAATNGYFGAASPLAASAILGTEKSTDGSKDVVE-IAVPENLVGAILGKGGKTLVEYQEL 453

Query: 594 TDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKAYLLINDKIQLEQARRAMASQE 761
           T   I++SKK        N++ VTITG       A  LI  +I  EQ  RA   Q+
Sbjct: 454 TGARIQISKKGEFVPGTRNRK-VTITGTPAATQAAQYLITQRITYEQGVRAANPQK 508


 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 58/248 (23%), Positives = 100/248 (40%), Gaps = 7/248 (2%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQF----LERYVLVMGDSHQC 170
           K++IP+ +AG +IGK G+TI  ++K TGA I++S  S ++ F     ER  L+ G     
Sbjct: 53  KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112

Query: 171 HEATKKIINKVVEDTKLCSFPNINYNE---IINATSYTIPDYFGVPIGTTPYNHTNSFEN 341
           +     I  K+ E  +     N+   E   I+   +   PD     + +           
Sbjct: 113 NAVHGFIAEKIREMPQ-----NVAKTEPVSILQPQTTVNPDRIKQTLPS----------- 156

Query: 342 STFSYSGNNFHMNSNQNNRNYGYYTPGTNSHFPVSRSLTTSFSQMDYIASDSSHGITRTL 521
                                   +P T    P     T+  +Q+  I  +S+ G+    
Sbjct: 157 ------------------------SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGL---- 188

Query: 522 EVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKAY 701
                    I+G  G ++  + E +   +++S+KP  +     +R+VT++G  E   KA 
Sbjct: 189 ---------IIGKGGATVKAVMEQSGAWVQLSQKP--DGINLQERVVTVSGEPEQNRKAV 237

Query: 702 LLINDKIQ 725
            LI  KIQ
Sbjct: 238 ELIIQKIQ 245


 Score = 33.5 bits (75), Expect = 0.82
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPK 110
           +I +P +  G ++GK G+T+ + ++ TGA IQ+S K
Sbjct: 428 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 463

>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3)
          Length = 339

 Score = 63.9 bits (154), Expect = 6e-10
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 23/266 (8%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS----PKSNNRQFLERYVLVMGDSHQC 170
           ++++P S  G LIGK G  I +I++STGA +QV+    P S      ER V + G     
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-----ERAVTISGTPDAI 155

Query: 171 HEATKKIINKVVED----------TKLCSFPNINYNEIINATSYTIPDYFGVP-IGTTPY 317
            +  K+I   ++E            K  S P I         +YTI   + +P       
Sbjct: 156 IQCVKQICVVMLESPPKGATIPYRPKPASTPVI----FAGGQAYTIQGQYAIPHPDQLTK 211

Query: 318 NHTNSFENSTF--------SYSGNNFHMNSNQNNRNYGYYTPGTNSHFPVSRSLTTSFSQ 473
            H  + + + F        ++ G    ++S++  +N    + G ++  P S         
Sbjct: 212 LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS--------- 262

Query: 474 MDYIASDSSHGITRTLEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNK 653
                       T  L +    IG I+G +G  I E+++++   IK++   TE S   ++
Sbjct: 263 ------------THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA-NATEGS---SE 306

Query: 654 RIVTITGLYENVSKAYLLINDKIQLE 731
           R +TITG   N+S A  LIN ++  E
Sbjct: 307 RQITITGTPANISLAQYLINARLTSE 332


 Score = 35.8 bits (81), Expect = 0.17
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +3

Query: 474 MDYIASDSSHGITRTLEV--NETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKN 647
           M+   S+    +T T+ +  +   +G+I+G KG ++ +++E +   I +S+         
Sbjct: 1   MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP----- 55

Query: 648 NKRIVTITGLYENVSKAYLLINDKIQ 725
            +RIVTITG  + + KA+ +I  K +
Sbjct: 56  -ERIVTITGPTDAIFKAFAMIAYKFE 80


 Score = 34.3 bits (77), Expect = 0.48
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           ++++     G +IGK+GET+  +++ +GA I +S         ER V + G +    +A 
Sbjct: 17  RLLMHGKEVGSIIGKKGETVKKMREESGARINIS----EGNCPERIVTITGPTDAIFKAF 72

Query: 183 KKIINKVVED 212
             I  K  ED
Sbjct: 73  AMIAYKFEED 82

>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3)
          Length = 339

 Score = 63.9 bits (154), Expect = 6e-10
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 23/266 (8%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS----PKSNNRQFLERYVLVMGDSHQC 170
           ++++P S  G LIGK G  I +I++STGA +QV+    P S      ER V + G     
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-----ERAVTISGTPDAI 155

Query: 171 HEATKKIINKVVED----------TKLCSFPNINYNEIINATSYTIPDYFGVP-IGTTPY 317
            +  K+I   ++E            K  S P I         +YTI   + +P       
Sbjct: 156 IQCVKQICVVMLESPPKGATIPYRPKPASTPVI----FAGGQAYTIQGQYAIPHPDQLTK 211

Query: 318 NHTNSFENSTF--------SYSGNNFHMNSNQNNRNYGYYTPGTNSHFPVSRSLTTSFSQ 473
            H  + + + F        ++ G    ++S++  +N    + G ++  P S         
Sbjct: 212 LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS--------- 262

Query: 474 MDYIASDSSHGITRTLEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNK 653
                       T  L +    IG I+G +G  I E+++++   IK++   TE S   ++
Sbjct: 263 ------------THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA-NATEGS---SE 306

Query: 654 RIVTITGLYENVSKAYLLINDKIQLE 731
           R +TITG   N+S A  LIN ++  E
Sbjct: 307 RQITITGTPANISLAQYLINARLTSE 332


 Score = 35.8 bits (81), Expect = 0.17
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +3

Query: 474 MDYIASDSSHGITRTLEV--NETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKN 647
           M+   S+    +T T+ +  +   +G+I+G KG ++ +++E +   I +S+         
Sbjct: 1   MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP----- 55

Query: 648 NKRIVTITGLYENVSKAYLLINDKIQ 725
            +RIVTITG  + + KA+ +I  K +
Sbjct: 56  -ERIVTITGPTDAIFKAFAMIAYKFE 80


 Score = 34.3 bits (77), Expect = 0.48
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           ++++     G +IGK+GET+  +++ +GA I +S         ER V + G +    +A 
Sbjct: 17  RLLMHGKEVGSIIGKKGETVKKMREESGARINIS----EGNCPERIVTITGPTDAIFKAF 72

Query: 183 KKIINKVVED 212
             I  K  ED
Sbjct: 73  AMIAYKFEED 82

>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2) (Putative heterogeneous
           nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP)
          Length = 362

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 41/284 (14%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS----PKSNNRQFLERYVLVMGDSHQC 170
           ++++P S  G LIGK G  I +I++STGA +QV+    P S      ER + + G     
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-----ERAITIAGIPQSI 155

Query: 171 HEATKKIINKVVED------------------------------TKLCSFPNINYNEIIN 260
            E  K+I   ++E                               +   SFP+   +  +N
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLN 215

Query: 261 AT-------SYTIPDYFGVPIGTTPYNHTNSFENSTFSYSGNNFHMNSNQNNRNYGYYTP 419
                    +YTI   + +P       H  + + S F  +  N   +  +++        
Sbjct: 216 PDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESS-------- 267

Query: 420 GTNSHFPVSRSLTTSFSQMDYIASDSSHGITRTLEVNETYIGAILGAKGRSIVELQEVTD 599
                   S  +   ++ +D  A  +SH +T    +    IG I+G +G  I E+++++ 
Sbjct: 268 --------SPEVKGYWAGLDASAQTTSHELT----IPNDLIGCIIGRQGAKINEIRQMSG 315

Query: 600 TNIKVSKKPTENSDKNNKRIVTITGLYENVSKAYLLINDKIQLE 731
             IK++  P E S     R VTITG   ++S A  LIN ++  E
Sbjct: 316 AQIKIA-NPVEGS---TDRQVTITGSAASISLAQYLINVRLSSE 355


 Score = 36.6 bits (83), Expect = 0.097
 Identities = 20/73 (27%), Positives = 41/73 (56%)
 Frame = +3

Query: 507 ITRTLEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNKRIVTITGLYEN 686
           +T  L ++   +G+I+G KG S+ +++E +   I +S+          +RI+T+ G    
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP------ERIITLAGPTNA 67

Query: 687 VSKAYLLINDKIQ 725
           + KA+ +I DK++
Sbjct: 68  IFKAFAMIIDKLE 80


 Score = 36.2 bits (82), Expect = 0.13
 Identities = 19/70 (27%), Positives = 39/70 (55%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           ++++     G +IGK+GE++  +++ +GA I +S         ER + + G ++   +A 
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKKMREESGARINIS----EGNCPERIITLAGPTNAIFKAF 72

Query: 183 KKIINKVVED 212
             II+K+ ED
Sbjct: 73  AMIIDKLEED 82

>sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
 sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic
           acid-binding protein SUB2.3)
 sp|O19048|PCBP1_RABIT Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
          Length = 356

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 28/272 (10%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS----PKSNNRQFLERYVLVMGDSHQC 170
           ++++P +  G LIGK G  I +I++STGA +QV+    P S      ER + + G     
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-----ERAITIAGVPQSV 155

Query: 171 HEATKKIINKVVEDTKLCSFPNINYNEIINATSYTIPDYFGVPI--------GTTPYNHT 326
            E  K+I   ++E            ++       TIP Y  +P         G    +  
Sbjct: 156 TECVKQICLVMLE----------TLSQSPQGRVMTIP-YQPMPASSPVICAGGQDRCSDA 204

Query: 327 NSFENSTFSYSGNNFHMNSNQNNRNYG-------YYTPGTNSHFPVSRSLTTSFSQMD-- 479
             + ++T    G      S Q                    SHF +     T F+ +D  
Sbjct: 205 AGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHG-GTGFAGIDSS 263

Query: 480 ------YIAS-DSSHGITRTLEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENS 638
                 Y AS D+S   T  L +    IG I+G +G +I E+++++   IK++  P E S
Sbjct: 264 SPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA-NPVEGS 322

Query: 639 DKNNKRIVTITGLYENVSKAYLLINDKIQLEQ 734
              + R VTITG   ++S A  LIN ++  E+
Sbjct: 323 ---SGRQVTITGSAASISLAQYLINARLSSEK 351


 Score = 40.0 bits (92), Expect = 0.009
 Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +3

Query: 474 MDYIASDSSHGITRTLEV--NETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKN 647
           MD   ++S   +T T+ +  +   +G+I+G KG S+  ++E +   I +S+         
Sbjct: 1   MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP----- 55

Query: 648 NKRIVTITGLYENVSKAYLLINDKIQ 725
            +RI+T+TG    + KA+ +I DK++
Sbjct: 56  -ERIITLTGPTNAIFKAFAMIIDKLE 80


 Score = 37.0 bits (84), Expect = 0.074
 Identities = 20/70 (28%), Positives = 39/70 (55%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           ++++     G +IGK+GE++  I++ +GA I +S         ER + + G ++   +A 
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKRIREESGARINIS----EGNCPERIITLTGPTNAIFKAF 72

Query: 183 KKIINKVVED 212
             II+K+ ED
Sbjct: 73  AMIIDKLEED 82

>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)
          Length = 365

 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 72/274 (26%), Positives = 115/274 (41%), Gaps = 31/274 (11%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS----PKSNNRQFLERYVLVMGDSHQC 170
           ++++P S  G LIGK G  I +I++STGA +QV+    P S      ER + + G     
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-----ERAITIAGIPQSI 155

Query: 171 HEATKKIINKVVEDTKLCSFPNINYNEIINATSYTIPDYFGVPIGTTPYNHTNSFENSTF 350
            E  K+I   ++E   L   P             + P  F    G      T S ++++F
Sbjct: 156 IECVKQICVVMLET--LSQSPPKGVTIPYRPKPSSSPVIFA---GGQDRYSTGS-DSASF 209

Query: 351 SYSGNNFHMNSNQNNRNYGYYT------------------PGTNSHFPVSRSLTTSFSQM 476
            ++  +  +N +        YT                      SHFP++    T FS +
Sbjct: 210 PHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHG-NTGFSGI 268

Query: 477 D--------YIASDSSHGIT-RTLEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPT 629
           +        Y   D+S   T   L +    IG I+G +G  I E+++++   IK++  P 
Sbjct: 269 ESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA-NPV 327

Query: 630 ENSDKNNKRIVTITGLYENVSKAYLLINDKIQLE 731
           E S     R VTITG   ++S A  LIN ++  E
Sbjct: 328 EGS---TDRQVTITGSAASISLAQYLINVRLSSE 358


 Score = 36.6 bits (83), Expect = 0.097
 Identities = 20/73 (27%), Positives = 41/73 (56%)
 Frame = +3

Query: 507 ITRTLEVNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNKRIVTITGLYEN 686
           +T  L ++   +G+I+G KG S+ +++E +   I +S+          +RI+T+ G    
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP------ERIITLAGPTNA 67

Query: 687 VSKAYLLINDKIQ 725
           + KA+ +I DK++
Sbjct: 68  IFKAFAMIIDKLE 80


 Score = 36.2 bits (82), Expect = 0.13
 Identities = 19/70 (27%), Positives = 39/70 (55%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           ++++     G +IGK+GE++  +++ +GA I +S         ER + + G ++   +A 
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKKMREESGARINIS----EGNCPERIITLAGPTNAIFKAF 72

Query: 183 KKIINKVVED 212
             II+K+ ED
Sbjct: 73  AMIIDKLEED 82

>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4)
          Length = 403

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 6/242 (2%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVS----PKSNNRQFLERYVLVMGDSHQC 170
           +++IP S  G LIGK G  I +I+++TGA +QV+    P S      ER V V G     
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-----ERAVTVSGVPDAI 159

Query: 171 HEATKKIINKVVEDTKLCSFPNINYNEIINATSYTIPDYFGVPIGTTPYNHTNSFENSTF 350
               ++I   ++E                     TIP +  + +GT   +      N  F
Sbjct: 160 ILCVRQICAVILESP---------------PKGATIPYHPSLSLGTVLLS-----ANQGF 199

Query: 351 SYSGNNFHMNSNQNNRNYGYYTPGTNSHFPVSRSLTTSFSQMDYIASDSSHGITRTLE-- 524
           S  G             YG  TP   +      S    F+    +        T + E  
Sbjct: 200 SVQG------------QYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFL 247

Query: 525 VNETYIGAILGAKGRSIVELQEVTDTNIKVSKKPTENSDKNNKRIVTITGLYENVSKAYL 704
           V    IG ++G +G  I E+++++  +IK+  +    ++   +R VTITG   +++ A  
Sbjct: 248 VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ----AEGAGERHVTITGSPVSIALAQY 303

Query: 705 LI 710
           LI
Sbjct: 304 LI 305


 Score = 34.7 bits (78), Expect = 0.37
 Identities = 23/77 (29%), Positives = 38/77 (49%)
 Frame = +3

Query: 3   KIIIPNSSAGLLIGKEGETINDIKKSTGAFIQVSPKSNNRQFLERYVLVMGDSHQCHEAT 182
           ++++     G +IGK+GET+  I++ + A I +S  S      ER   + G +     A 
Sbjct: 21  RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CPERITTITGSTAAVFHAV 76

Query: 183 KKIINKVVEDTKLCSFP 233
             I  K+ ED  LC+ P
Sbjct: 77  SMIAFKLDED--LCAAP 91

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,972,963
Number of Sequences: 369166
Number of extensions: 1887888
Number of successful extensions: 6943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6352
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01036

Planaria EST Database

DrC_01036

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail