DrC_01032
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01032 (480 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromer... 32 0.75 sp|Q9LME2|Y1226_ARATH Hypothetical protein At1g22260 31 1.3 sp|O93794|TOP2_CANGA DNA topoisomerase 2 (DNA topoisomerase... 31 1.3 sp|P61430|Y1275_ARATH Hypothetical protein At1g22275 30 2.2 sp|Q26503|TPM_SCHHA Tropomyosin 30 2.2 sp|Q26519|TPM_SCHJA Tropomyosin 30 2.9 sp|O34525|SPPA_BACSU Putative signal peptide peptidase sppA 30 3.7 sp|Q8XHQ5|SYC_CLOPE Cysteinyl-tRNA synthetase (Cysteine--tR... 30 3.7 sp|Q890M4|SYC_CLOTE Cysteinyl-tRNA synthetase (Cysteine--tR... 30 3.7 sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) 30 3.7
>sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromere protein F) (Mitosin) (AH antigen) Length = 3210 Score = 32.0 bits (71), Expect = 0.75 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%) Frame = +1 Query: 46 IQKREMNDECKDGMDRLYDENDKAIQKLDADCDVAFVKIVNTYTAIYETWEK-KCGLDFD 222 I+K ++ ++C+D + R + D+A K A + K+ + + E +C L+ Sbjct: 330 IEKEKVLNKCRDELVRTTAQYDQASTKYTA-LEQKLKKLTEDLSCQRQNAESARCSLE-- 386 Query: 223 KMSKECYEEFKVKNEAPTKEINILDKECDNAYAKLVKDFNKAEAK---LKAECSK 378 + KE +EF+ + + LD+EC A+L ++ +A+ L+AE K Sbjct: 387 QKIKEKEKEFQEELSRQQRSFQTLDQECIQMKARLTQELQQAKNMHNVLQAELDK 441
>sp|Q9LME2|Y1226_ARATH Hypothetical protein At1g22260 Length = 871 Score = 31.2 bits (69), Expect = 1.3 Identities = 24/95 (25%), Positives = 41/95 (43%) Frame = +1 Query: 85 MDRLYDENDKAIQKLDADCDVAFVKIVNTYTAIYETWEKKCGLDFDKMSKECYEEFKVKN 264 + L ND+AI ++ DV +I+N+ E K FDK +C EE K Sbjct: 552 LKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKIIKDLSNKFDKELSDCKEESK--- 608 Query: 265 EAPTKEINILDKECDNAYAKLVKDFNKAEAKLKAE 369 +++ + +E + L ++ E LKA+ Sbjct: 609 ----RQLLTIQEEHSSLILSLREEHESKELNLKAK 639
>sp|O93794|TOP2_CANGA DNA topoisomerase 2 (DNA topoisomerase II) Length = 1406 Score = 31.2 bits (69), Expect = 1.3 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = +1 Query: 88 DRLYDENDKAIQKLDADCDVAFVKIVNTYTAIYETWEKKCGLDFDKMSKECYEE-FKVKN 264 D +E+++A +K D D + VN ++ T+E GL ++KE YE+ K K Sbjct: 1082 DEDLEESEEATRKKDKDDE----STVNGPEELFGTYEYLLGLKIWSLTKERYEKLLKQKQ 1137 Query: 265 EAPTKEINILDKECDNAYAKLVKDF 339 E T+ N+L + + + DF Sbjct: 1138 EKETELENLLKLSAKDLWNNDLDDF 1162
>sp|P61430|Y1275_ARATH Hypothetical protein At1g22275 Length = 856 Score = 30.4 bits (67), Expect = 2.2 Identities = 22/95 (23%), Positives = 42/95 (44%) Frame = +1 Query: 85 MDRLYDENDKAIQKLDADCDVAFVKIVNTYTAIYETWEKKCGLDFDKMSKECYEEFKVKN 264 + L ND+AI ++ DV +I+N+ E K+ +DK +C EE K Sbjct: 552 LKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKIIKELSTKYDKGLSDCKEESK--- 608 Query: 265 EAPTKEINILDKECDNAYAKLVKDFNKAEAKLKAE 369 +++ + +E + + ++ E LKA+ Sbjct: 609 ----RQLLTIQEEHSSRILNIREEHESKELNLKAK 639
>sp|Q26503|TPM_SCHHA Tropomyosin Length = 284 Score = 30.4 bits (67), Expect = 2.2 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 30/153 (19%) Frame = +1 Query: 16 ECRYRMRKNEIQKREMNDECKDGMDRLYDENDKA-------------IQKLDADCDVAFV 156 E +M++ +I E+ + ++ M++L + + +A I+ L+ D +V+ Sbjct: 45 ELNTKMKQAQIDCDEVQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSS 104 Query: 157 KIVNTYTAIYETWEKKCGLDFDKMSKECYEEFKVKNEAPTKEINIL-------------- 294 ++ T T + E + + S+ ++ ++++ A + +N L Sbjct: 105 RLTETLTKLEEASKTA------EESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDA 158 Query: 295 DKECDNAYAKLV---KDFNKAEAKLKAECSKSV 384 D++ D A KL DF +AEA+L+A SK V Sbjct: 159 DRKYDEAARKLAIAEVDFKRAEARLEAAESKIV 191
>sp|Q26519|TPM_SCHJA Tropomyosin Length = 284 Score = 30.0 bits (66), Expect = 2.9 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 30/153 (19%) Frame = +1 Query: 16 ECRYRMRKNEIQKREMNDECKDGMDRLYDENDKA-------------IQKLDADCDVAFV 156 E +M++ +I E+ + ++ M++L + +A I+ L+ D +V+ Sbjct: 45 ELNTKMKQAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRRIRLLEEDLEVSSS 104 Query: 157 KIVNTYTAIYETWEKKCGLDFDKMSKECYEEFKVKNEAPTKEINIL-------------- 294 ++ T T + E + + S+ ++ ++++ A + +N L Sbjct: 105 RLTETLTKLEEASKTA------EESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDA 158 Query: 295 DKECDNAYAKLV---KDFNKAEAKLKAECSKSV 384 D++ D A KL DF +AEA+L+A SK V Sbjct: 159 DRKYDEAARKLAIAEVDFERAEARLEAAESKIV 191
>sp|O34525|SPPA_BACSU Putative signal peptide peptidase sppA Length = 335 Score = 29.6 bits (65), Expect = 3.7 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Frame = +1 Query: 184 YETWEKKCGLDFDKMSKECYEEFKVKNEAPTKEI-NILDKECDNAYAKLVKDFNKAEAKL 360 Y K G+ F+ + +++ + TKE NI+ DN+Y V +K Sbjct: 179 YSKLADKLGISFETIKSGAHKDIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMP 238 Query: 361 KAECSK 378 KAE K Sbjct: 239 KAEVKK 244
>sp|Q8XHQ5|SYC_CLOPE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) Length = 466 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +1 Query: 40 NEIQKREMNDECKDGMDRLYDENDKAIQKLDADCDVAFVKIVNTYTAIYE 189 +E+ + EMN+E K ++ L +K I+K+D D + A + TAI++ Sbjct: 330 DEVSREEMNEEEKAYLESLNKYKEKYIEKMDDDFNTA-----DAITAIFD 374
>sp|Q890M4|SYC_CLOTE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) Length = 465 Score = 29.6 bits (65), Expect = 3.7 Identities = 12/37 (32%), Positives = 25/37 (67%) Frame = +1 Query: 40 NEIQKREMNDECKDGMDRLYDENDKAIQKLDADCDVA 150 NE+++ ++N+E K + +L + +K I+K+D D + A Sbjct: 329 NEVKRNDLNEEEKKYIKKLDEYREKYIEKMDDDFNTA 365
>sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) Length = 284 Score = 29.6 bits (65), Expect = 3.7 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 30/153 (19%) Frame = +1 Query: 16 ECRYRMRKNEIQKREMNDECKDGMDRLYDENDKA-------------IQKLDADCDVAFV 156 E +M++ +I E + ++ M++L + + +A I+ L+ D +V+ Sbjct: 45 ELNNKMKQAQIDCDEAQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSS 104 Query: 157 KIVNTYTAIYETWEKKCGLDFDKMSKECYEEFKVKNEAPTKEINIL-------------- 294 ++ T T + E + + S+ ++ ++++ A + +N L Sbjct: 105 RLTETLTKLEEASKTA------EESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDA 158 Query: 295 DKECDNAYAKLV---KDFNKAEAKLKAECSKSV 384 D++ D A KL DF +AEA+L+A SK V Sbjct: 159 DRKYDEAARKLAIAEVDFERAEARLEAAESKIV 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,924,871
Number of Sequences: 369166
Number of extensions: 666145
Number of successful extensions: 2365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2364
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
