Planaria EST Database

DrC_01031

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01031
         (873 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91V41|RAB14_MOUSE  Ras-related protein Rab-14                 333   3e-91
sp|P61107|RAB14_RAT  Ras-related protein Rab-14 >gi|46577643...   333   3e-91
sp|P36410|RAB4_DICDI  Ras-related protein Rab4                    291   1e-78
sp|P36863|YPTV4_VOLCA  GTP-binding protein yptV4 (RAB2 homolog)   244   2e-64
sp|P53994|RAB2A_MOUSE  Ras-related protein Rab-2A                 242   9e-64
sp|Q05975|RAB2_LYMST  Ras-related protein Rab-2                   242   1e-63
sp|P61019|RAB2A_HUMAN  Ras-related protein Rab-2A >gi|465776...   241   1e-63
sp|Q39570|YPTC4_CHLRE  GTP-binding protein YPTC4                  241   2e-63
sp|Q01971|RAB2A_RABIT  Ras-related protein Rab-2A                 241   2e-63
sp|Q8WUD1|RAB2B_HUMAN  Ras-related protein Rab-2B                 241   2e-63

>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14
          Length = 215

 Score =  333 bits (855), Expect = 3e-91
 Identities = 161/215 (74%), Positives = 183/215 (85%), Gaps = 2/215 (0%)
 Frame = +1

Query: 64  MANQSYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKI 243
           MA   YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE++G+KI
Sbjct: 1   MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60

Query: 244 KLQIWDTAGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIF 423
           KLQIWDTAGQERFRAVTRSYYRGAAGAL+VYD+TR+ST+NH+ SWLTDAR LT+PNTVI 
Sbjct: 61  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120

Query: 424 MIGNKSDMNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGS 603
           +IGNK+D+  QRDVTYEE K  AEENGL+FLE SAKTGE VEDAF+E A+KI+QNIQDGS
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180

Query: 604 VDLNSANDGVVMKNN--QAGQNSDGKSDRSSSCQC 702
           +DLN+A  GV  K +  Q G+ +     +   C C
Sbjct: 181 LDLNAAESGVQHKPSAPQGGRLTSEPQPQREGCGC 215

>sp|P61107|RAB14_RAT Ras-related protein Rab-14
 sp|P61106|RAB14_HUMAN Ras-related protein Rab-14
          Length = 215

 Score =  333 bits (855), Expect = 3e-91
 Identities = 161/215 (74%), Positives = 183/215 (85%), Gaps = 2/215 (0%)
 Frame = +1

Query: 64  MANQSYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKI 243
           MA   YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE++G+KI
Sbjct: 1   MATTPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60

Query: 244 KLQIWDTAGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIF 423
           KLQIWDTAGQERFRAVTRSYYRGAAGAL+VYD+TR+ST+NH+ SWLTDAR LT+PNTVI 
Sbjct: 61  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120

Query: 424 MIGNKSDMNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGS 603
           +IGNK+D+  QRDVTYEE K  AEENGL+FLE SAKTGE VEDAF+E A+KI+QNIQDGS
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180

Query: 604 VDLNSANDGVVMKNN--QAGQNSDGKSDRSSSCQC 702
           +DLN+A  GV  K +  Q G+ +     +   C C
Sbjct: 181 LDLNAAESGVQHKPSAPQGGRLTSEPQPQREGCGC 215

>sp|P36410|RAB4_DICDI Ras-related protein Rab4
          Length = 205

 Score =  291 bits (746), Expect = 1e-78
 Identities = 143/208 (68%), Positives = 170/208 (81%)
 Frame = +1

Query: 76  SYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQI 255
           S+ Y YIFKYIIIGDMGVGKSCLLHQFTE KF+ D PHTIGVEFGTRI+++N +KIKLQI
Sbjct: 2   SFPYEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQI 61

Query: 256 WDTAGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGN 435
           WDTAGQERFRAVTRSYYRGAAGALLVYD+TR+ T+NH+ +WLTDAR LT+PNTVI +IGN
Sbjct: 62  WDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGN 121

Query: 436 KSDMNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLN 615
           K D+  QRDVTYEE  A A++NGL+F+E SAKTGE VE+AF+ TA+ IFQ++Q+G+VDL 
Sbjct: 122 KKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDL- 180

Query: 616 SANDGVVMKNNQAGQNSDGKSDRSSSCQ 699
              DG + KN    Q    K +  S CQ
Sbjct: 181 -IPDGGITKN--PPQTITDKKNLFSRCQ 205

>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 (RAB2 homolog)
          Length = 213

 Score =  244 bits (623), Expect = 2e-64
 Identities = 121/211 (57%), Positives = 159/211 (75%), Gaps = 6/211 (2%)
 Frame = +1

Query: 82  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQIWD 261
           +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I I+G++IKLQIWD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWD 61

Query: 262 TAGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGNKS 441
           TAGQE FR++TRSYYRGAAGALLVYD+TR+ TFNH+ SWL DAR   +PN  I +IGNK 
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKC 121

Query: 442 DMNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLNSA 621
           D+  +R VT EEG+  A+E+GL+FLE SA+T   VE+AFI TA++I++ IQDG  D+++ 
Sbjct: 122 DLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNE 181

Query: 622 NDGVVM------KNNQAGQNSDGKSDRSSSC 696
           + G+ +         QA +  +G + +SSSC
Sbjct: 182 SYGIKVGYGAGNAGPQAAKPGEGDARKSSSC 212

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A
          Length = 212

 Score =  242 bits (618), Expect = 9e-64
 Identities = 117/200 (58%), Positives = 155/200 (77%)
 Frame = +1

Query: 85  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQIWDT 264
           Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I I+G++IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62

Query: 265 AGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGNKSD 444
           AGQE FR++TRSYYRGAAGALLVYD+TR+ TFNH+ +WL DAR  ++ N VI +IGNKSD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query: 445 MNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLNSAN 624
           +  +R+V  EEG+A A E+GL+F+E SAKT   VE+AFI TA++I++ IQ+G  D+N+  
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query: 625 DGVVMKNNQAGQNSDGKSDR 684
           +G+ +    A  N+   S++
Sbjct: 183 NGIKIGPQHAATNASHGSNQ 202

>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2
          Length = 212

 Score =  242 bits (617), Expect = 1e-63
 Identities = 116/184 (63%), Positives = 149/184 (80%)
 Frame = +1

Query: 82  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQIWD 261
           +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I I+G++IKLQIWD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 61

Query: 262 TAGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGNKS 441
           TAGQE FR++TRSYYRGAAGALLVYD+TR+ TFNH+ +WL DAR  ++ N VI +IGNKS
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 121

Query: 442 DMNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLNSA 621
           D+  +R+V  EEG+A A E+GL+F+E SAKT   VE+AFI TA++I+Q IQDG  D+N+ 
Sbjct: 122 DLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNE 181

Query: 622 NDGV 633
            +G+
Sbjct: 182 ANGI 185

>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A
 sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A
          Length = 212

 Score =  241 bits (616), Expect = 1e-63
 Identities = 116/194 (59%), Positives = 152/194 (78%)
 Frame = +1

Query: 85  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQIWDT 264
           Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I I+G++IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62

Query: 265 AGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGNKSD 444
           AGQE FR++TRSYYRGAAGALLVYD+TR+ TFNH+ +WL DAR  ++ N VI +IGNKSD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query: 445 MNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLNSAN 624
           +  +R+V  EEG+A A E+GL+F+E SAKT   VE+AFI TA++I++ IQ+G  D+N+  
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query: 625 DGVVMKNNQAGQNS 666
           +G+ +    A  N+
Sbjct: 183 NGIKIGPQHAATNA 196

>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4
          Length = 213

 Score =  241 bits (615), Expect = 2e-63
 Identities = 120/211 (56%), Positives = 158/211 (74%), Gaps = 6/211 (2%)
 Frame = +1

Query: 82  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQIWD 261
           +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I I+G++IKLQIWD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWD 61

Query: 262 TAGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGNKS 441
           TAGQE FR++TRSYYRGAAGALLVYD+TR+ TFNH+ SWL DAR   +PN  I +IGNK 
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKC 121

Query: 442 DMNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLNSA 621
           D+  +R VT EEG+  A+E+GL+FLE SA+T   VE+AFI TA++I++ IQDG  D+++ 
Sbjct: 122 DLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNE 181

Query: 622 NDGVVM------KNNQAGQNSDGKSDRSSSC 696
           + G+ +         Q  +  +G + +SSSC
Sbjct: 182 SYGIKVGYGGGNAGPQTVKPGEGGAAKSSSC 212

>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A
          Length = 212

 Score =  241 bits (615), Expect = 2e-63
 Identities = 119/207 (57%), Positives = 155/207 (74%), Gaps = 11/207 (5%)
 Frame = +1

Query: 85  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQIWDT 264
           Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I I+G++IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62

Query: 265 AGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGNKSD 444
           AGQE FR++TRSYYRGAAGALLVYD+TR+ TFNH+ +WL DAR  ++ N VI +IGNKSD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query: 445 MNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLNSAN 624
           +  +R+V  EEG+A A E+GL+F+E SAKT   VE+AFI TA++I++ IQ+G  D+N+  
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query: 625 DGVVM-----------KNNQAGQNSDG 672
           +G+ +             NQ GQ + G
Sbjct: 183 NGIKIGPQHGATNATHAGNQGGQQAGG 209

>sp|Q8WUD1|RAB2B_HUMAN Ras-related protein Rab-2B
          Length = 216

 Score =  241 bits (615), Expect = 2e-63
 Identities = 119/198 (60%), Positives = 153/198 (77%)
 Frame = +1

Query: 85  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEINGEKIKLQIWDT 264
           Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ I+G++IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62

Query: 265 AGQERFRAVTRSYYRGAAGALLVYDVTRKSTFNHIHSWLTDARGLTSPNTVIFMIGNKSD 444
           AGQE FR++TRSYYRGAAGALLVYD+TR+ TFNH+ SWL DAR  +S N VI +IGNKSD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122

Query: 445 MNEQRDVTYEEGKAVAEENGLMFLECSAKTGEGVEDAFIETARKIFQNIQDGSVDLNSAN 624
           +  +RDV  EEG+A A E+GL+F+E SAKT   VE+AFI TA++I++ IQ G  D+++  
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEA 182

Query: 625 DGVVMKNNQAGQNSDGKS 678
           +G+ +   Q+   S G S
Sbjct: 183 NGIKIGPQQSISTSVGPS 200

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,810,970
Number of Sequences: 369166
Number of extensions: 2145238
Number of successful extensions: 7260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6760
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01031

  1. Dr_sW_026_B07
  2. Dr_sW_023_L03
  3. Dr_sW_018_N08