DrC_01023
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01023 (1432 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P46508|YME1_SCHMA YME1 protein homolog 416 e-116 sp|Q96TA2|YMEL1_HUMAN ATP-dependent metalloprotease YME1L1 ... 389 e-107 sp|O88967|YMEL1_MOUSE ATP-dependent metalloprotease YME1L1 ... 387 e-107 sp|Q925S8|YMEL1_RAT ATP-dependent metalloprotease YME1L1 (Y... 384 e-106 sp|P54813|YME1_CAEEL YME1 protein homolog 380 e-105 sp|P0AAI3|FTSH_ECOLI Cell division protein ftsH >gi|7741682... 339 1e-92 sp|Q8X9L0|FTSH_ECO57 Cell division protease ftsH 339 1e-92 sp|P63344|FTSH_SALTI Cell division protease ftsH >gi|540407... 336 1e-91 sp|Q8K9G8|FTSH_BUCAP Cell division protein ftsH 335 3e-91 sp|P32795|YME1_YEAST YME1 protein (TAT-binding homolog 11) ... 331 3e-90
>sp|P46508|YME1_SCHMA YME1 protein homolog Length = 662 Score = 416 bits (1070), Expect = e-116 Identities = 212/410 (51%), Positives = 291/410 (70%), Gaps = 1/410 (0%) Frame = +1 Query: 1 NPAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASR 180 NP KF +IGA LP+G++L GPPGVGKT LAKAV+GEA+VPF+YAS S FDE+ VG+GASR Sbjct: 187 NPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASR 246 Query: 181 IRELFETAKAHAPCVIFIDELDAISNKKIDAXXXXXXXXXXXXXXIELDGFKSSQGILVL 360 IR+LF TAK ++PC++FIDE+D++ + + E+DGF+S +GI+VL Sbjct: 247 IRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSPHHPFANQTINQLLAEMDGFQSKEGIIVL 306 Query: 361 SATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGST 540 ATN E LDKAL+RPGRFD+Q+ ++PP +EGR AL LY KVK ++ID E+LA G+ Sbjct: 307 GATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTV 366 Query: 541 GFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRKRIPDETTNRITAIHE 720 G+TGA+I+NLVNQAA+ A +D FV+ HLW ARDR++MG +++R D+ TNR++A HE Sbjct: 367 GYTGADIQNLVNQAAIAAALRNDPFVEMHHLWDARDRLIMGPAKRRPLDDQTNRVSAFHE 426 Query: 721 AGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKEL-HTTKAQLQARIDCNLGGKVA 897 AGHAL A LT +S+ +HKVTIIPR + G TSFL++K++ T+AQL A++D +GG+V Sbjct: 427 AGHALVALLTADSIPLHKVTIIPRGEAGGLTSFLQEKDISFMTRAQLLAQLDVLMGGRVG 486 Query: 898 EELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMSKDSKYRSFSNSISDKESLSPEAKSK 1077 EEL++G DKVT GAA D + AT +AQ+MV +G S R + + E L + Sbjct: 487 EELVFGADKVTNGAADDFRKATILAQNMVKRFGFSSKIGPRVIPD--TQDEQLGEATRDL 544 Query: 1078 IDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELLS 1227 ID+E++ +LNDS RVR LL+ + + K+LAE LL ETL EV +L+ Sbjct: 545 IDKEVDQLLNDSLTRVRTLLSSQSKQHKLLAEALLHFETLTKDEVLAVLA 594
>sp|Q96TA2|YMEL1_HUMAN ATP-dependent metalloprotease YME1L1 (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin-associated metalloprotease) (PAMP) Length = 773 Score = 389 bits (998), Expect = e-107 Identities = 204/416 (49%), Positives = 283/416 (68%), Gaps = 2/416 (0%) Frame = +1 Query: 1 NPAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASR 180 NP KF +G LP+GI+L GPPG GKT LA+AVAGEA VPF YAS SEFDEM+VGVGASR Sbjct: 360 NPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASR 419 Query: 181 IRELFETAKAHAPCVIFIDELDAISNKKIDAXXXXXXXXXXXXXXIELDGFKSSQGILVL 360 IR LF AKA+APCVIFIDELD++ K+I++ E+DGFK ++G++++ Sbjct: 420 IRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIII 479 Query: 361 SATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGST 540 ATN EALD ALIRPGRFD+QV + PD +GR + K Y +K+K +D E +A+G+ Sbjct: 480 GATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTV 539 Query: 541 GFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRKRIPDETTNR-ITAIH 717 GF+GAE++NLVNQAAL A + + V L ++D+ILMG R+ + + N+ ITA H Sbjct: 540 GFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYH 599 Query: 718 EAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGKV 894 E+GHA+ A+ T +++ I+K TI+PR +LGH S L + + + T+AQL A++D ++GG+V Sbjct: 600 ESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRV 659 Query: 895 AEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMSKDSKYRSFSNSISDKESLSPEAKS 1074 AEELI+G D +T GA++D AT IA+ MV +GMS+ ++ SD LSPE +S Sbjct: 660 AEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTY----SDTGKLSPETQS 715 Query: 1075 KIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELLSDNNLD 1242 I++EI I+L DSYER + +L + + K LAE LL +ETLD E+ +L L+ Sbjct: 716 AIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLE 771
>sp|O88967|YMEL1_MOUSE ATP-dependent metalloprotease YME1L1 (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) Length = 715 Score = 387 bits (995), Expect = e-107 Identities = 203/416 (48%), Positives = 283/416 (68%), Gaps = 2/416 (0%) Frame = +1 Query: 1 NPAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASR 180 NP KF +G LP+GI+L GPPG GKT LA+AVAGEA VPF YAS SEFDEM+VGVGASR Sbjct: 302 NPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASR 361 Query: 181 IRELFETAKAHAPCVIFIDELDAISNKKIDAXXXXXXXXXXXXXXIELDGFKSSQGILVL 360 IR LF AKA+APCVIFIDELD++ K+I++ E+DGFK ++G++++ Sbjct: 362 IRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIII 421 Query: 361 SATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGST 540 ATN EALD ALIRPGRFD+QV + PD +GR + K Y +K+K +D E +A+G+ Sbjct: 422 GATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTV 481 Query: 541 GFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRKRIPDETTNR-ITAIH 717 GF+GAE++NLVNQAAL A + + V L ++D+ILMG R+ + + N+ ITA H Sbjct: 482 GFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYH 541 Query: 718 EAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGKV 894 E+GHA+ A+ T +++ I+K TI+PR +LGH S L + + + T+AQL A++D ++GG+V Sbjct: 542 ESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRV 601 Query: 895 AEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMSKDSKYRSFSNSISDKESLSPEAKS 1074 AEELI+G D +T GA++D AT IA+ MV +GMS+ ++ SD LSPE +S Sbjct: 602 AEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTY----SDTGKLSPETQS 657 Query: 1075 KIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELLSDNNLD 1242 I++EI I+L +SYER + +L + + K LAE LL +ETLD E+ +L L+ Sbjct: 658 AIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLE 713
>sp|Q925S8|YMEL1_RAT ATP-dependent metalloprotease YME1L1 (YME1-like protein 1) (ATP-dependent metalloprotease FtsH1) (Meg-4) Length = 715 Score = 384 bits (986), Expect = e-106 Identities = 202/416 (48%), Positives = 281/416 (67%), Gaps = 2/416 (0%) Frame = +1 Query: 1 NPAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASR 180 NP KF +G LP+GI+L GPPG GKT LA+AVAGEA VPF YAS SEFDEM+VGVGASR Sbjct: 302 NPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASR 361 Query: 181 IRELFETAKAHAPCVIFIDELDAISNKKIDAXXXXXXXXXXXXXXIELDGFKSSQGILVL 360 IR LF AKA+APCVIFIDELD++ K+I+ E+DGFK ++G++++ Sbjct: 362 IRNLFREAKANAPCVIFIDELDSVGGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGVIII 421 Query: 361 SATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGST 540 ATN EALD ALIRPGRFD+QV + PD +GR + K Y +K+K +D E +A+G+ Sbjct: 422 GATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTV 481 Query: 541 GFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRKRIPDETTNR-ITAIH 717 GF+GAE++NLVNQAAL A + + V L ++D+ILMG R+ + + N+ ITA H Sbjct: 482 GFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYH 541 Query: 718 EAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGKV 894 E+GHA+ A+ T +++ I+K TI+PR +LGH S L + + + +AQL A++D ++GG+V Sbjct: 542 ESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNEIRAQLLAQMDVSMGGRV 601 Query: 895 AEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMSKDSKYRSFSNSISDKESLSPEAKS 1074 AEELI+G D +T GA++D AT IA+ MV +GMS+ ++ SD LSPE +S Sbjct: 602 AEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTY----SDTGKLSPETQS 657 Query: 1075 KIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELLSDNNLD 1242 I++EI I+L +SYER + +L + + K LAE LL +ETLD E+ +L L+ Sbjct: 658 AIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLE 713
>sp|P54813|YME1_CAEEL YME1 protein homolog Length = 676 Score = 380 bits (977), Expect = e-105 Identities = 201/421 (47%), Positives = 280/421 (66%), Gaps = 8/421 (1%) Frame = +1 Query: 1 NPAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASR 180 +P K+ +G LP+G++L GPPG GKT LA+A+AGEA+VPF + + SEFDE+ VG GA R Sbjct: 222 DPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARR 281 Query: 181 IRELFETAKAHAPCVIFIDELDAISNKKIDAXXXXXXXXXXXXXXIELDGFKSSQGILVL 360 +R+LF+ AKA APC+IFIDE+D++ +K++ E+DGF ++GI+V+ Sbjct: 282 VRDLFDKAKARAPCIIFIDEIDSVGSKRVSNSIHPYANQTINQLLSEMDGFTRNEGIIVI 341 Query: 361 SATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGST 540 +ATN + LDKAL+RPGRFD++V + PD GR +F Y SK+ S ID + LAKGST Sbjct: 342 AATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGST 401 Query: 541 GFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRK--RIPDETTNRITAI 714 GFTGA+I+N+VNQAAL A ++ V +L +ARDR+LMG +R RIPDE NR TA Sbjct: 402 GFTGADIENMVNQAALKAATDNAVEVTMAYLDEARDRVLMGPARTGGRIPDEEANRNTAY 461 Query: 715 HEAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKELH-TTKAQLQARIDCNLGGK 891 HEAGH L + T ++ +HKVTIIPR SLGHT+ L +K+ + TKAQ+ A +D +GG+ Sbjct: 462 HEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQLTKAQMLATLDVMMGGR 521 Query: 892 VAEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMSKDSKYRSFS-----NSISDKESL 1056 VAEELI+G DKVT GAA DL AT +A MV +GMS R F+ +++ L Sbjct: 522 VAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGLRDFTAQDNESALVKVSDL 581 Query: 1057 SPEAKSKIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELLSDNN 1236 +P+ ID EIN +L +SY+R + +L + ++LAE LL++ETL EV ++S Sbjct: 582 APQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADEVKRVISGQK 641 Query: 1237 L 1239 + Sbjct: 642 I 642
>sp|P0AAI3|FTSH_ECOLI Cell division protein ftsH sp|P0AAI4|FTSH_SHIFL Cell division protein ftsH Length = 644 Score = 339 bits (870), Expect = 1e-92 Identities = 175/421 (41%), Positives = 271/421 (64%), Gaps = 13/421 (3%) Frame = +1 Query: 4 PAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASRI 183 P++F ++G +P+G+++ GPPG GKT LAKA+AGEAKVPF S S+F EM+VGVGASR+ Sbjct: 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV 233 Query: 184 RELFETAKAHAPCVIFIDELDAISNKKID--AXXXXXXXXXXXXXXIELDGFKSSQGILV 357 R++FE AK APC+IFIDE+DA+ ++ +E+DGF+ ++GI+V Sbjct: 234 RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 Query: 358 LSATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGS 537 ++ATN + LD AL+RPGRFD QV + PD GR+ + K++ +V + DID +A+G+ Sbjct: 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT 353 Query: 538 TGFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRK-RIPDETTNRITAI 714 GF+GA++ NLVN+AAL A + + V KA+D+I+MGA R+ + E TA Sbjct: 354 PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAY 413 Query: 715 HEAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGK 891 HEAGHA+ L P +HKVTIIPR +LG T FL + + + ++ +L+++I GG+ Sbjct: 414 HEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGR 473 Query: 892 VAEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMS---------KDSKYRSFSNSISD 1044 +AEE+IYGP+ V+ GA+ D+KVAT +A++MV +G S ++ S++ Sbjct: 474 LAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAK 533 Query: 1045 KESLSPEAKSKIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELL 1224 + +S E ID+E+ ++ +Y R R+LLTDN D L + + L+K+ET+D ++ +L+ Sbjct: 534 AKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLM 593 Query: 1225 S 1227 + Sbjct: 594 A 594
>sp|Q8X9L0|FTSH_ECO57 Cell division protease ftsH Length = 644 Score = 339 bits (870), Expect = 1e-92 Identities = 175/421 (41%), Positives = 271/421 (64%), Gaps = 13/421 (3%) Frame = +1 Query: 4 PAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASRI 183 P++F ++G +P+G+++ GPPG GKT LAKA+AGEAKVPF S S+F EM+VGVGASR+ Sbjct: 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV 233 Query: 184 RELFETAKAHAPCVIFIDELDAISNKKID--AXXXXXXXXXXXXXXIELDGFKSSQGILV 357 R++FE AK APC+IFIDE+DA+ ++ +E+DGF+ ++GI+V Sbjct: 234 RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 Query: 358 LSATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGS 537 ++ATN + LD AL+RPGRFD QV + PD GR+ + K++ +V + DID +A+G+ Sbjct: 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT 353 Query: 538 TGFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRK-RIPDETTNRITAI 714 GF+GA++ NLVN+AAL A + + V KA+D+I+MGA R+ + E TA Sbjct: 354 PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAY 413 Query: 715 HEAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGK 891 HEAGHA+ L P +HKVTIIPR +LG T FL + + + ++ +L+++I GG+ Sbjct: 414 HEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGR 473 Query: 892 VAEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMS---------KDSKYRSFSNSISD 1044 +AEE+IYGP+ V+ GA+ D+KVAT +A++MV +G S ++ S++ Sbjct: 474 LAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAK 533 Query: 1045 KESLSPEAKSKIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELL 1224 + +S E ID+E+ ++ +Y R R+LLTDN D L + + L+K+ET+D ++ +L+ Sbjct: 534 AKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLM 593 Query: 1225 S 1227 + Sbjct: 594 A 594
>sp|P63344|FTSH_SALTI Cell division protease ftsH sp|P63343|FTSH_SALTY Cell division protease ftsH Length = 644 Score = 336 bits (861), Expect = 1e-91 Identities = 173/421 (41%), Positives = 270/421 (64%), Gaps = 13/421 (3%) Frame = +1 Query: 4 PAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASRI 183 P++F ++G +P+G+++ GPPG GKT LAKA+AGEAKVPF S S+F EM+VGVGASR+ Sbjct: 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV 233 Query: 184 RELFETAKAHAPCVIFIDELDAISNKKID--AXXXXXXXXXXXXXXIELDGFKSSQGILV 357 R++FE AK APC+IFIDE+DA+ ++ +E+DGF+ ++GI+V Sbjct: 234 RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 Query: 358 LSATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGS 537 ++ATN + LD AL+RPGRFD QV + PD GR+ + K++ +V + DID +A+G+ Sbjct: 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGT 353 Query: 538 TGFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRK-RIPDETTNRITAI 714 GF+GA++ NLVN+AAL A + + V KA+D+I+MGA R+ + E TA Sbjct: 354 PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAY 413 Query: 715 HEAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGK 891 HEAGHA+ L P +HKVTIIPR +LG T FL + + + ++ +L+++I GG+ Sbjct: 414 HEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGR 473 Query: 892 VAEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMS---------KDSKYRSFSNSISD 1044 +AEE+IYG + V+ GA+ D+KVAT +A++MV +G S ++ S++ Sbjct: 474 LAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAK 533 Query: 1045 KESLSPEAKSKIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELL 1224 + +S E ID+E+ ++ +Y R R++LTDN D L + + L+K+ET+D ++ +L+ Sbjct: 534 AKHMSDETARIIDQEVKALIERNYNRARQILTDNMDILHAMKDALMKYETIDAPQIDDLM 593 Query: 1225 S 1227 + Sbjct: 594 A 594
>sp|Q8K9G8|FTSH_BUCAP Cell division protein ftsH Length = 613 Score = 335 bits (858), Expect = 3e-91 Identities = 173/429 (40%), Positives = 271/429 (63%), Gaps = 13/429 (3%) Frame = +1 Query: 4 PAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASRI 183 P++F ++G +P+GI++ GPPG GKT LAKA+AGEAKVPF S S+F EM+VGVGASR+ Sbjct: 174 PSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV 233 Query: 184 RELFETAKAHAPCVIFIDELDAISNKKID--AXXXXXXXXXXXXXXIELDGFKSSQGILV 357 R++FE A+ APC+IFIDE+DA+ ++ +E+DGF ++G+++ Sbjct: 234 RDMFEHARKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVIL 293 Query: 358 LSATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGS 537 ++ATN + LD AL+RPGRFD QV + PD GRK + K++ KV S D+D +A+G+ Sbjct: 294 IAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLSEDVDPMIIARGT 353 Query: 538 TGFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRK-RIPDETTNRITAI 714 GF+GA++ NLVN+AAL A +++ V H KA+D+I+MG+ R+ + + TA Sbjct: 354 PGFSGADLANLVNEAALFAARFNNRVVSMIHFEKAKDKIMMGSERRSMVMSDFQKESTAY 413 Query: 715 HEAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGK 891 HEAGH + L P+ HKVTIIPR +LG T FL + + L ++ +L+++I GG+ Sbjct: 414 HEAGHVIIGRLVPDHDPAHKVTIIPRGQALGITFFLPESDILSISRQKLESQISTLYGGR 473 Query: 892 VAEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMS---------KDSKYRSFSNSISD 1044 +AEE+IYG V+ GA D+KVAT +A++MV +G S ++ S++ Sbjct: 474 LAEEIIYGSQNVSTGAFNDIKVATNLARNMVTQWGFSDKLGPLLYAEEEGEVFLGRSVAK 533 Query: 1045 KESLSPEAKSKIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELL 1224 + +S E IDEE+ +++ +Y R RK+L +N D L + + L+K+ET+D++++ +L+ Sbjct: 534 AKHMSDETARIIDEEVKLLIEVNYNRARKILNENLDILHAMKDALIKYETIDSLQIDDLM 593 Query: 1225 SDNNLDSSK 1251 + K Sbjct: 594 ERREVRKPK 602
>sp|P32795|YME1_YEAST YME1 protein (TAT-binding homolog 11) (OSD1 protein) Length = 747 Score = 331 bits (849), Expect = 3e-90 Identities = 186/419 (44%), Positives = 259/419 (61%), Gaps = 2/419 (0%) Frame = +1 Query: 1 NPAKFYEIGATLPRGIILFGPPGVGKTSLAKAVAGEAKVPFIYASASEFDEMYVGVGASR 180 +P K+ +G LP+G++L GPPG GKT LA+A AGEA V F + S SEFDE+YVGVGA R Sbjct: 302 DPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKR 361 Query: 181 IRELFETAKAHAPCVIFIDELDAISNKKIDAXXXXXXXXXXXXXXIELDGFKSSQGILVL 360 IR+LF A++ AP +IFIDELDAI K+ + +ELDGF + GI+++ Sbjct: 362 IRDLFAQARSRAPAIIFIDELDAIGGKR-NPKDQAYAKQTLNQLLVELDGFSQTSGIIII 420 Query: 361 SATNNKEALDKALIRPGRFDLQVELTPPDFEGRKALFKLYTSKVKCSNDIDYEQLAKGST 540 ATN EALDKAL RPGRFD V + PD GR + K + K+ ++++D +A+G+ Sbjct: 421 GATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTP 480 Query: 541 GFTGAEIKNLVNQAALMAGFNDDKFVKSDHLWKARDRILMGASRK-RIPDETTNRITAIH 717 G +GAE+ NLVNQAA+ A + V H A+D+ILMGA RK + + + TA H Sbjct: 481 GLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMVLTDAARKATAFH 540 Query: 718 EAGHALTAFLTPNSLAIHKVTIIPRTHSLGHTSFLRQKE-LHTTKAQLQARIDCNLGGKV 894 EAGHA+ A T + ++K TI+PR +LG T L + + + TK + QAR+D +GGK+ Sbjct: 541 EAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEMDKVDITKRECQARLDVCMGGKI 600 Query: 895 AEELIYGPDKVTAGAATDLKVATAIAQSMVMHYGMSKDSKYRSFSNSISDKESLSPEAKS 1074 AEELIYG D T+G +DL+ AT A++MV YGMS D + S + ES S + + Sbjct: 601 AEELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMSDDVGPVNLS---ENWESWSNKIRD 657 Query: 1075 KIDEEINIILNDSYERVRKLLTDNTDKLKILAETLLKHETLDTVEVAELLSDNNLDSSK 1251 D E+ +L DS ER R+LLT +L LA+ L+++ETLD E+ ++ LD K Sbjct: 658 IADNEVIELLKDSEERARRLLTKKNVELHRLAQGLIEYETLDAHEIEQVCKGEKLDKLK 716
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,127,888
Number of Sequences: 369166
Number of extensions: 2606908
Number of successful extensions: 11360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10760
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 17120858780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
