Planaria EST Database


DrC_01013

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01013
         (398 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D8S3|ARFG3_MOUSE  ADP-ribosylation factor GTPase-activa...    70   2e-12
sp|Q9NP61|ARFG3_HUMAN  ADP-ribosylation factor GTPase-activa...    70   2e-12
sp|Q09531|YQP4_CAEEL  Hypothetical protein F07F6.4 in chromo...    61   9e-10
sp|Q10367|YDBH_SCHPO  Hypothetical protein C22E12.17c in chr...    34   0.092
sp|Q17062|PER_ANTPE  Period circadian protein                      32   0.46 
sp|Q9W5D0|Y34F_DROME  Hypothetical protein CG12467 in chromo...    32   0.46 
sp|P38682|GLO3_YEAST  ADP-ribosylation factor GTPase-activat...    32   0.59 
sp|Q9NZW4|DSPP_HUMAN  Dentin sialophosphoprotein precursor [...    31   1.0  
sp|P18899|DDR48_YEAST  Stress protein DDR48 (DNA damage-resp...    30   2.3  
sp|P22810|HMOC_DROME  Homeotic protein ocelliless (Orthodent...    30   2.3  
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 (ARF GAP 3)
          Length = 525

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 48/109 (44%), Positives = 60/109 (55%), Gaps = 9/109 (8%)
 Frame = +3

Query: 18  AQKKFGNAKSISSDAFNNGYNNEDSHT-SHLSRFQGSTSISSDDYFGGGPNTGNMSRKDS 194
           AQKKFGN K+ISSD +       D  T + L R   S+SISS D F       +  RK +
Sbjct: 426 AQKKFGNVKAISSDMYFGIQAQTDFETRARLERLSTSSSISSADLF-------DEQRKQT 478

Query: 195 IGSY--------APDMYELKEGIRHGVTKVAGKLSSLANDVMTRVQERY 317
            G+Y        APDM + K+G+R     VAGKLS  AN VMT +Q+RY
Sbjct: 479 AGNYNLSNVLPNAPDMAQFKQGVR----SVAGKLSVFANGVMTSIQDRY 523
>sp|Q9NP61|ARFG3_HUMAN ADP-ribosylation factor GTPase-activating protein 3 (ARF GAP 3)
          Length = 516

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 47/109 (43%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
 Frame = +3

Query: 18  AQKKFGNAKSISSDAFNNGYNNEDSHT-SHLSRFQGSTSISSDDYFGGGPNTGNMSRKDS 194
           AQKKFGN K+ISSD +    +  D  T + L R   S+SISS D F          RK  
Sbjct: 417 AQKKFGNVKAISSDMYFGRQSQADYETRARLERLSASSSISSADLF-------EEPRKQP 469

Query: 195 IGSY--------APDMYELKEGIRHGVTKVAGKLSSLANDVMTRVQERY 317
            G+Y        APDM + K+G+R     VAGKLS  AN V+T +Q+RY
Sbjct: 470 AGNYSLSSVLPNAPDMAQFKQGVR----SVAGKLSVFANGVVTSIQDRY 514
>sp|Q09531|YQP4_CAEEL Hypothetical protein F07F6.4 in chromosome III
          Length = 529

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 36/93 (38%), Positives = 51/93 (54%)
 Frame = +3

Query: 21  QKKFGNAKSISSDAFNNGYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIG 200
           QKKFGNAK+ISSD +      +    S L++ +G TS  S+D +G G      S+     
Sbjct: 431 QKKFGNAKAISSDMYFGTPEMDCETRSALTKCEGQTSFGSEDLWGNGSQQRQSSQ----- 485

Query: 201 SYAPDMYELKEGIRHGVTKVAGKLSSLANDVMT 299
              PDM +LK+  R G +KVA K S+L++   T
Sbjct: 486 --VPDMSDLKDSFRAGASKVAEKWSTLSSSFST 516
>sp|Q10367|YDBH_SCHPO Hypothetical protein C22E12.17c in chromosome I
          Length = 486

 Score = 34.3 bits (77), Expect = 0.092
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
 Frame = +3

Query: 3   NCSELAQKKFGNAKSISSDA-FNNGYNNEDSHTS---HLSRFQGSTSISSDDYFGGGPNT 170
           N    A+  F + KSISSD  F  G  + ++       LS F+ +T+ISS  YFG   + 
Sbjct: 374 NAPTYARDHFASQKSISSDQYFGRGSFDPEAAAEAQERLSSFRDATAISSKSYFGEEED- 432

Query: 171 GNMSRKDSIGSYAPDMYELK----------EGIRHGVTKVAGKLSSLANDVMTRVQERYA 320
                ++   S+ PD   L+          E I+  + + A KLS    D + +V  RY 
Sbjct: 433 ---ENEEGESSHRPDSAYLRDIAETATEDIEAIKVAIHQGAEKLS----DFIQKVGARYN 485

Query: 321 Y 323
           +
Sbjct: 486 F 486
>sp|Q17062|PER_ANTPE Period circadian protein
          Length = 849

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 36  NAKSISSDAFNNGYNNEDSHTSHLSR--FQGSTSISSDDYFGGGPNTGNMS 182
           NAK +S  A++N  +N  S  SH S+    GS S  S  Y GG P+T + S
Sbjct: 10  NAK-VSDSAYSNSCSNSQSRRSHSSKSTHSGSNSSGSSGY-GGQPSTSSSS 58
>sp|Q9W5D0|Y34F_DROME Hypothetical protein CG12467 in chromosome 1
          Length = 1561

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 39   AKSISSDAFNNGYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMS 182
            A   S++A    +N  +SH +H      S ++SS  + GGG   G +S
Sbjct: 1486 ATGFSTNATTTAHNTLNSHATHTLNSNHSHTLSSSHHAGGGSQPGTLS 1533
>sp|P38682|GLO3_YEAST ADP-ribosylation factor GTPase-activating protein GLO3
          Length = 493

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 24/117 (20%)
 Frame = +3

Query: 24  KKFGNAKSISSDA-FNNGYNNEDSHTS---HLSRFQGSTSISSDDYFG------------ 155
           +++G  K+ISSD  F  G  +E ++      L  F  +TSISS  YFG            
Sbjct: 380 ERYGTQKAISSDQLFGRGSFDEAANREAHDKLKTFDNATSISSSSYFGEDKEVDEFGNPI 439

Query: 156 --GGPNTGNMSRKDSIGSY------APDMYELKEGIRHGVTKVAGKLSSLANDVMTR 302
              G   GN   ++S   +      A D  ++   +R  V + A KL S   D + +
Sbjct: 440 NSSGSGAGNFDGRNSNNGFIDFNASADDELQM---LRDVVEQGAEKLGSYLRDYLRK 493
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
            (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
          Length = 1253

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +3

Query: 9    SELAQKKFGNAKSISSDAFNNGYNNEDSHTSHLSRFQGSTSISSDDY-----FGGGPNTG 173
            S+ +     N  S SSD+ ++  ++  S +S  S    STS S+D+       G G N G
Sbjct: 1175 SDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSKSGNGNNNG 1234

Query: 174  NMSRKDSIGS 203
            + S  DS GS
Sbjct: 1235 SDSDSDSEGS 1244
>sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48)
           (YP 75) (Flocculent-specific protein)
          Length = 430

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
 Frame = +3

Query: 9   SELAQKKFGNAKSISSDAFNN----GYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNT-- 170
           S   +  +G+    S  + NN    G NN+DS+ S         S S+DD +G   N   
Sbjct: 242 SNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDS 301

Query: 171 --GNMSRKDSIGSYAPDMY 221
              +  +K S GS   D Y
Sbjct: 302 YGSSNKKKSSYGSNNDDSY 320

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 42  KSISSDAFNN----GYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIGSYA 209
           K+ SS   NN    G NN+DS+ S   +     S ++D Y     ++   +  DS GS  
Sbjct: 176 KNKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNN 235

Query: 210 PDMY 221
            D Y
Sbjct: 236 DDSY 239

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 36  NAKSISSDAFNN---GYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIGSY 206
           N K  S  + NN   G NN+DS+ S  ++ + S   ++DD +G   N       DS GS 
Sbjct: 332 NKKKSSYGSSNNDSYGSNNDDSYGSS-NKKKSSYGSNNDDSYGSSNN------NDSYGSN 384

Query: 207 APDMY 221
             D Y
Sbjct: 385 NDDSY 389
>sp|P22810|HMOC_DROME Homeotic protein ocelliless (Orthodenticle protein)
          Length = 671

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +3

Query: 3   NCSELAQKKFGNAKSISSDAFNNGYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMS 182
           +CS  +     N+ +  S + NN  ++  ++++  S+ QG++  S     GGG + GN S
Sbjct: 155 SCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQQ---GGGSSGGNNS 211

Query: 183 RKDSIGSYA 209
             +S  + A
Sbjct: 212 NNNSAAAAA 220
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,107,555
Number of Sequences: 369166
Number of extensions: 857897
Number of successful extensions: 2265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01013

  1. Dr_sW_025_I10
  2. Dr_sW_007_I04