Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_I04
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activa... 63 2e-10
sp|Q9NP61|ARFG3_HUMAN ADP-ribosylation factor GTPase-activa... 62 3e-10
sp|Q09531|YQP4_CAEEL Hypothetical protein F07F6.4 in chromo... 55 5e-08
sp|Q17062|PER_ANTPE Period circadian protein 32 0.46
sp|Q10367|YDBH_SCHPO Hypothetical protein C22E12.17c in chr... 32 0.46
sp|Q9W5D0|Y34F_DROME Hypothetical protein CG12467 in chromo... 32 0.46
sp|P38682|GLO3_YEAST ADP-ribosylation factor GTPase-activat... 30 1.3
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 30 1.7
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 30 2.3
sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-resp... 29 3.0
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 (ARF GAP 3)
Length = 525
Score = 62.8 bits (151), Expect = 2e-10
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Frame = +1
Query: 1 FGNAKSISSDAFNNGYNNEDSHT-SHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIGSY 177
FGN K+ISSD + D T + L R S+SISS D F + RK + G+Y
Sbjct: 430 FGNVKAISSDMYFGIQAQTDFETRARLERLSTSSSISSADLF-------DEQRKQTAGNY 482
Query: 178 --------APDMYELKEGIRHGVTKVAGKLSSLANDVMTRVQERY 288
APDM + K+G+R VAGKLS AN VMT +Q+RY
Sbjct: 483 NLSNVLPNAPDMAQFKQGVR----SVAGKLSVFANGVMTSIQDRY 523
>sp|Q9NP61|ARFG3_HUMAN ADP-ribosylation factor GTPase-activating protein 3 (ARF GAP 3)
Length = 516
Score = 62.4 bits (150), Expect = 3e-10
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Frame = +1
Query: 1 FGNAKSISSDAFNNGYNNEDSHT-SHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIGSY 177
FGN K+ISSD + + D T + L R S+SISS D F RK G+Y
Sbjct: 421 FGNVKAISSDMYFGRQSQADYETRARLERLSASSSISSADLF-------EEPRKQPAGNY 473
Query: 178 --------APDMYELKEGIRHGVTKVAGKLSSLANDVMTRVQERY 288
APDM + K+G+R VAGKLS AN V+T +Q+RY
Sbjct: 474 SLSSVLPNAPDMAQFKQGVR----SVAGKLSVFANGVVTSIQDRY 514
>sp|Q09531|YQP4_CAEEL Hypothetical protein F07F6.4 in chromosome III
Length = 529
Score = 55.1 bits (131), Expect = 5e-08
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +1
Query: 1 FGNAKSISSDAFNNGYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIGSYA 180
FGNAK+ISSD + + S L++ +G TS S+D +G G S+
Sbjct: 434 FGNAKAISSDMYFGTPEMDCETRSALTKCEGQTSFGSEDLWGNGSQQRQSSQ-------V 486
Query: 181 PDMYELKEGIRHGVTKVAGKLSSLANDVMT 270
PDM +LK+ R G +KVA K S+L++ T
Sbjct: 487 PDMSDLKDSFRAGASKVAEKWSTLSSSFST 516
>sp|Q17062|PER_ANTPE Period circadian protein
Length = 849
Score = 32.0 bits (71), Expect = 0.46
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 7 NAKSISSDAFNNGYNNEDSHTSHLSR--FQGSTSISSDDYFGGGPNTGNMS 153
NAK +S A++N +N S SH S+ GS S S Y GG P+T + S
Sbjct: 10 NAK-VSDSAYSNSCSNSQSRRSHSSKSTHSGSNSSGSSGY-GGQPSTSSSS 58
>sp|Q10367|YDBH_SCHPO Hypothetical protein C22E12.17c in chromosome I
Length = 486
Score = 32.0 bits (71), Expect = 0.46
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Frame = +1
Query: 1 FGNAKSISSDA-FNNGYNNEDSHTS---HLSRFQGSTSISSDDYFGGGPNTGNMSRKDSI 168
F + KSISSD F G + ++ LS F+ +T+ISS YFG + ++
Sbjct: 383 FASQKSISSDQYFGRGSFDPEAAAEAQERLSSFRDATAISSKSYFGEEED----ENEEGE 438
Query: 169 GSYAPDMYELK----------EGIRHGVTKVAGKLSSLANDVMTRVQERYAY 294
S+ PD L+ E I+ + + A KLS D + +V RY +
Sbjct: 439 SSHRPDSAYLRDIAETATEDIEAIKVAIHQGAEKLS----DFIQKVGARYNF 486
>sp|Q9W5D0|Y34F_DROME Hypothetical protein CG12467 in chromosome 1
Length = 1561
Score = 32.0 bits (71), Expect = 0.46
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 10 AKSISSDAFNNGYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMS 153
A S++A +N +SH +H S ++SS + GGG G +S
Sbjct: 1486 ATGFSTNATTTAHNTLNSHATHTLNSNHSHTLSSSHHAGGGSQPGTLS 1533
>sp|P38682|GLO3_YEAST ADP-ribosylation factor GTPase-activating protein GLO3
Length = 493
Score = 30.4 bits (67), Expect = 1.3
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Frame = +1
Query: 1 FGNAKSISSDA-FNNGYNNEDSHTS---HLSRFQGSTSISSDDYFG-------------- 126
+G K+ISSD F G +E ++ L F +TSISS YFG
Sbjct: 382 YGTQKAISSDQLFGRGSFDEAANREAHDKLKTFDNATSISSSSYFGEDKEVDEFGNPINS 441
Query: 127 GGPNTGNMSRKDSIGSY------APDMYELKEGIRHGVTKVAGKLSSLANDVMTR 273
G GN ++S + A D ++ +R V + A KL S D + +
Sbjct: 442 SGSGAGNFDGRNSNNGFIDFNASADDELQM---LRDVVEQGAEKLGSYLRDYLRK 493
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
(Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
Length = 1253
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 NAKSISSDAFNNGYNNEDSHTSHLSRFQGSTSISSDDY-----FGGGPNTGNMSRKDSIG 171
N S SSD+ ++ ++ S +S S STS S+D+ G G N G+ S DS G
Sbjct: 1184 NESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSKSGNGNNNGSDSDSDSEG 1243
Query: 172 S 174
S
Sbjct: 1244 S 1244
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 7 NAKSISSDAFNNGYNNEDSHTSHLSRFQ--GSTSISSDDYFGGGPNTG-NMSRKDSIGS 174
N+ S +++ NN NN +++ +L++ GST SS GG ++G N S SIG+
Sbjct: 512 NSNSNNNNINNNNNNNNNNNNIYLTKKPSIGSTDESSTGSLGGNNSSGNNNSSSGSIGN 570
>sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48)
(YP 75) (Flocculent-specific protein)
Length = 430
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 13 KSISSDAFNN----GYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIGSYA 180
K+ SS NN G NN+DS+ S + S ++D Y ++ + DS GS
Sbjct: 176 KNKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNN 235
Query: 181 PDMY 192
D Y
Sbjct: 236 DDSY 239
Score = 28.9 bits (63), Expect = 3.9
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +1
Query: 7 NAKSISSDAFNNGY--NNEDSHTSHLSRFQGSTSISSDDYFGGGPNT----GNMSRKDSI 168
N S S N+ Y NN+DS+ S S S+DD +G N + +K S
Sbjct: 253 NDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYGSSNKKKSSY 312
Query: 169 GSYAPDMY 192
GS D Y
Sbjct: 313 GSNNDDSY 320
Score = 27.7 bits (60), Expect = 8.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 7 NAKSISSDAFNN---GYNNEDSHTSHLSRFQGSTSISSDDYFGGGPNTGNMSRKDSIGSY 177
N K S + NN G NN+DS+ S ++ + S ++DD +G N DS GS
Sbjct: 332 NKKKSSYGSSNNDSYGSNNDDSYGSS-NKKKSSYGSNNDDSYGSSNN------NDSYGSN 384
Query: 178 APDMY 192
D Y
Sbjct: 385 NDDSY 389
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,415,869
Number of Sequences: 369166
Number of extensions: 797021
Number of successful extensions: 2013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2004
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)