Planaria EST Database

DrC_00996

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00996
         (852 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O96647|RL10_BOMMA  60S ribosomal protein L10 (QM protein ...   317   3e-86
sp|O61231|RL10_DROME  60S ribosomal protein L10 (QM protein ...   311   1e-84
sp|Q9XSI3|RL10_BOVIN  60S ribosomal protein L10 (QM protein ...   308   1e-83
sp|Q6ZWV3|RL10_MOUSE  60S ribosomal protein L10 (QM protein ...   308   2e-83
sp|P27635|RL10_HUMAN  60S ribosomal protein L10 (QM protein)...   307   2e-83
sp|Q5R931|RL10_PONPY  60S ribosomal protein L10                   306   4e-83
sp|Q96L21|RL10L_HUMAN  60S ribosomal protein L10-like             301   2e-81
sp|Q08200|RL10_CHICK  60S ribosomal protein L10 (Jun-binding...   295   1e-79
sp|Q09533|RL10_CAEEL  60S ribosomal protein L10 (QM protein ...   295   1e-79
sp|Q9P769|RL10B_SCHPO  60S ribosomal protein L10-B                295   1e-79

>sp|O96647|RL10_BOMMA 60S ribosomal protein L10 (QM protein homolog)
          Length = 219

 Score =  317 bits (811), Expect = 3e-86
 Identities = 151/216 (69%), Positives = 176/216 (81%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRYCKNK YPKSR+ RGVPDPKI+IFDLGKK+A  D+FP CVHL+S E EQ+
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEA RIC NKYLVK CGKD FH+R+R HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G VARV+IGQPI SVR  +     +IEA RRAK KFPG+QK+ VSK +GF+K+ +DE
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWRRHRAHL 710
           + KLR+ G L  DG  V+Y P+ G LD WR+ +A +
Sbjct: 181 FEKLREEGRLANDGCIVQYRPEHGPLDAWRKVQAEI 216

>sp|O61231|RL10_DROME 60S ribosomal protein L10 (QM protein homolog) (dQM)
          Length = 218

 Score =  311 bits (797), Expect = 1e-84
 Identities = 146/211 (69%), Positives = 171/211 (81%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRYCKNK YPKSR+ RGVPDPKI+IFDLG+KKA  ++FP CVHL+S E EQ+
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEA RIC NKYLVK CGKD FH+R+R HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G VARV+IGQPI SVR  + +   +IEA RRAK KFPG+QK+ VSK +GF+K+ ++ 
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWRR 695
           Y +LR    L PDG NVKY P+ G +  W +
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPEHGPIAAWEK 211

>sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 (QM protein homolog)
          Length = 214

 Score =  308 bits (789), Expect = 1e-83
 Identities = 147/210 (70%), Positives = 171/210 (81%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA  DEFP C H++S E EQ+
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G VARV IGQ I S+R +  + EH+IEA RRAK KFPG+QK+ +SK +GF+K+  DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 692
           +  +     L PDG  VKY+P++G LD WR
Sbjct: 181 FENMVAEKRLIPDGCGVKYIPNRGPLDKWR 210

>sp|Q6ZWV3|RL10_MOUSE 60S ribosomal protein L10 (QM protein homolog)
 sp|Q6PDV7|RL10_RAT 60S ribosomal protein L10
          Length = 214

 Score =  308 bits (788), Expect = 2e-83
 Identities = 147/210 (70%), Positives = 171/210 (81%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA  DEFP C H++S E EQ+
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G VARV IGQ I S+R +  + EH+IEA RRAK KFPG+QK+ +SK +GF+K+  DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 692
           +  +     L PDG  VKY+P++G LD WR
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPNRGPLDKWR 210

>sp|P27635|RL10_HUMAN 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM)
           (Laminin receptor homolog)
          Length = 214

 Score =  307 bits (787), Expect = 2e-83
 Identities = 147/210 (70%), Positives = 170/210 (80%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA  DEFP C H++S E EQ+
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G VARV IGQ I S+R +  + EH+IEA RRAK KFPG+QK+ +SK +GF+K+  DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 692
           +  +     L PDG  VKY+P +G LD WR
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWR 210

>sp|Q5R931|RL10_PONPY 60S ribosomal protein L10
          Length = 214

 Score =  306 bits (785), Expect = 4e-83
 Identities = 147/210 (70%), Positives = 170/210 (80%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA  DEFP C H++S E EQ+
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G VARV IGQ I S+R +  + EH+IEA RRAK KFPG+QK+ +SK +GF+K+  DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 692
           +  +     L PDG  VKY P++G LD WR
Sbjct: 181 FEDMVAEKRLIPDGCGVKYTPNRGPLDKWR 210

>sp|Q96L21|RL10L_HUMAN 60S ribosomal protein L10-like
          Length = 214

 Score =  301 bits (770), Expect = 2e-81
 Identities = 145/210 (69%), Positives = 168/210 (80%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA  DEFP   H++S E EQ+
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEAARICANKY+VK CG+D FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G VARV IGQ I S+R +  + EH+IEA RRAK KFPG+QK+ +SK +GF+K+  DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 692
           +  +     L PDG  VKY+P  G LD WR
Sbjct: 181 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWR 210

>sp|Q08200|RL10_CHICK 60S ribosomal protein L10 (Jun-binding protein JIF-1)
          Length = 210

 Score =  295 bits (755), Expect = 1e-79
 Identities = 139/204 (68%), Positives = 165/204 (80%)
 Frame = +3

Query: 81  RCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQISSEALE 260
           RCYRYCKNK YPKSR+ RGVPDPKI+IFDLG+KKA  DEFP C H++S E EQ+SSEALE
Sbjct: 2   RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALE 61

Query: 261 AARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFGKPLGVV 440
           AARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFGKP G V
Sbjct: 62  AARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTV 121

Query: 441 ARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDEYLKLRQ 620
           ARV +GQ I S+R +  + EH++EA RRAK KFPG+QK+ +SK +GF+K+  D + ++  
Sbjct: 122 ARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVA 181

Query: 621 TGVLYPDGVNVKYLPDKGSLDLWR 692
              L PDG  VKY+P +G LD WR
Sbjct: 182 QKRLIPDGCGVKYVPGRGPLDRWR 205

>sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein homolog)
          Length = 214

 Score =  295 bits (754), Expect = 1e-79
 Identities = 141/209 (67%), Positives = 168/209 (80%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           MGRRPARCYRY KNK YPKSR+ RGVPD KI+IFDLG K+A  D FPACVH++S E E +
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           SSEALEAARICANKY+VK CGKD FHLRVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G+VARV IG  +FS+R +E +V+H IEAFRRAK KFPG+Q +V S+ +GF+KW +++
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDRED 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSLDLW 689
           Y ++R  G L  DGV V+   + G L  W
Sbjct: 181 YERMRAEGRLRSDGVGVQLQREHGPLTKW 209

>sp|Q9P769|RL10B_SCHPO 60S ribosomal protein L10-B
          Length = 221

 Score =  295 bits (754), Expect = 1e-79
 Identities = 142/206 (68%), Positives = 167/206 (81%)
 Frame = +3

Query: 63  MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 242
           M RRPARCYRYCKNK YPKSRYNR VPD KI+IFDLG+K+A  DEFP C+HL+S E EQI
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 243 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 422
           +SEALEAARICANKYLVK  GKDSFHLRVR HP+HV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 423 KPLGVVARVKIGQPIFSVRGREVHVEHMIEAFRRAKMKFPGQQKVVVSKMYGFSKWPKDE 602
           KP G+VARV IGQ + SVR ++      IEA RR + KFPGQQ+++VSK +GFS++ +DE
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180

Query: 603 YLKLRQTGVLYPDGVNVKYLPDKGSL 680
           Y++ R  G + PDG   K+L  +GSL
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,551,194
Number of Sequences: 369166
Number of extensions: 1693894
Number of successful extensions: 4483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4453
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00996

  1. Dr_sW_025_B04
  2. Dr_sW_024_C24