Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C24
(805 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O96647|RL10_BOMMA 60S ribosomal protein L10 (QM protein ... 315 9e-86
sp|O61231|RL10_DROME 60S ribosomal protein L10 (QM protein ... 310 4e-84
sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 (QM protein ... 306 6e-83
sp|Q6ZWV3|RL10_MOUSE 60S ribosomal protein L10 (QM protein ... 305 7e-83
sp|P27635|RL10_HUMAN 60S ribosomal protein L10 (QM protein)... 305 1e-82
sp|Q5R931|RL10_PONPY 60S ribosomal protein L10 304 2e-82
sp|Q96L21|RL10L_HUMAN 60S ribosomal protein L10-like 298 9e-81
sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein ... 295 1e-79
sp|Q9P769|RL10B_SCHPO 60S ribosomal protein L10-B 293 4e-79
sp|Q09127|RL10A_SCHPO 60S ribosomal protein L10-A (QM prote... 293 5e-79
>sp|O96647|RL10_BOMMA 60S ribosomal protein L10 (QM protein homolog)
Length = 219
Score = 315 bits (807), Expect = 9e-86
Identities = 150/216 (69%), Positives = 176/216 (81%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRYCKNK YPKSR+ RGVPDPKI+IFDLGKK+A D+FP CVHL+S E EQ+
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEA RIC NKYLVK CGKD FH+R+R HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G VARV+IGQPI SVR + +IEA RRAK KFPG+QK+ VS+ +GF+K+ +DE
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWRRHRAHL 664
+ KLR+ G L DG V+Y P+ G LD WR+ +A +
Sbjct: 181 FEKLREEGRLANDGCIVQYRPEHGPLDAWRKVQAEI 216
>sp|O61231|RL10_DROME 60S ribosomal protein L10 (QM protein homolog) (dQM)
Length = 218
Score = 310 bits (793), Expect = 4e-84
Identities = 145/211 (68%), Positives = 171/211 (81%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRYCKNK YPKSR+ RGVPDPKI+IFDLG+KKA ++FP CVHL+S E EQ+
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEA RIC NKYLVK CGKD FH+R+R HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G VARV+IGQPI SVR + + +IEA RRAK KFPG+QK+ VS+ +GF+K+ ++
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWRR 649
Y +LR L PDG NVKY P+ G + W +
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPEHGPIAAWEK 211
>sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 (QM protein homolog)
Length = 214
Score = 306 bits (783), Expect = 6e-83
Identities = 145/210 (69%), Positives = 171/210 (81%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA DEFP C H++S E EQ+
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G VARV IGQ I S+R + + +H+IEA RRAK KFPG+QK+ +S+ +GF+K+ DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 646
+ + L PDG VKY+P++G LD WR
Sbjct: 181 FENMVAEKRLIPDGCGVKYIPNRGPLDKWR 210
>sp|Q6ZWV3|RL10_MOUSE 60S ribosomal protein L10 (QM protein homolog)
sp|Q6PDV7|RL10_RAT 60S ribosomal protein L10
Length = 214
Score = 305 bits (782), Expect = 7e-83
Identities = 145/210 (69%), Positives = 171/210 (81%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA DEFP C H++S E EQ+
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G VARV IGQ I S+R + + +H+IEA RRAK KFPG+QK+ +S+ +GF+K+ DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 646
+ + L PDG VKY+P++G LD WR
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPNRGPLDKWR 210
>sp|P27635|RL10_HUMAN 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM)
(Laminin receptor homolog)
Length = 214
Score = 305 bits (781), Expect = 1e-82
Identities = 145/210 (69%), Positives = 170/210 (80%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA DEFP C H++S E EQ+
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G VARV IGQ I S+R + + +H+IEA RRAK KFPG+QK+ +S+ +GF+K+ DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 646
+ + L PDG VKY+P +G LD WR
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWR 210
>sp|Q5R931|RL10_PONPY 60S ribosomal protein L10
Length = 214
Score = 304 bits (779), Expect = 2e-82
Identities = 145/210 (69%), Positives = 170/210 (80%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA DEFP C H++S E EQ+
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEAARICANKY+VK CGKD FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G VARV IGQ I S+R + + +H+IEA RRAK KFPG+QK+ +S+ +GF+K+ DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 646
+ + L PDG VKY P++G LD WR
Sbjct: 181 FEDMVAEKRLIPDGCGVKYTPNRGPLDKWR 210
>sp|Q96L21|RL10L_HUMAN 60S ribosomal protein L10-like
Length = 214
Score = 298 bits (764), Expect = 9e-81
Identities = 143/210 (68%), Positives = 168/210 (80%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRYCKNK YPKSR+ RGVPD KI+IFDLG+KKA DEFP H++S E EQ+
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEAARICANKY+VK CG+D FH+RVR HP+HVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G VARV IGQ I S+R + + +H+IEA RRAK KFPG+QK+ +S+ +GF+K+ DE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLWR 646
+ + L PDG VKY+P G LD WR
Sbjct: 181 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWR 210
>sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein homolog)
Length = 214
Score = 295 bits (755), Expect = 1e-79
Identities = 142/209 (67%), Positives = 167/209 (79%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
MGRRPARCYRY KNK YPKSR+ RGVPD KI+IFDLG K+A D FPACVH++S E E +
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
SSEALEAARICANKY+VK CGKD FHLRVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G+VARV IG +FS+R +E +V H IEAFRRAK KFPG+Q +V SR +GF+KW +++
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDRED 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSLDLW 643
Y ++R G L DGV V+ + G L W
Sbjct: 181 YERMRAEGRLRSDGVGVQLQREHGPLTKW 209
>sp|Q9P769|RL10B_SCHPO 60S ribosomal protein L10-B
Length = 221
Score = 293 bits (750), Expect = 4e-79
Identities = 141/206 (68%), Positives = 167/206 (81%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
M RRPARCYRYCKNK YPKSRYNR VPD KI+IFDLG+K+A DEFP C+HL+S E EQI
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
+SEALEAARICANKYLVK GKDSFHLRVR HP+HV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G+VARV IGQ + SVR ++ IEA RR + KFPGQQ+++VS+ +GFS++ +DE
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSL 634
Y++ R G + PDG K+L +GSL
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206
>sp|Q09127|RL10A_SCHPO 60S ribosomal protein L10-A (QM protein homolog) (SpQM)
Length = 221
Score = 293 bits (749), Expect = 5e-79
Identities = 141/206 (68%), Positives = 167/206 (81%)
Frame = +2
Query: 17 MGRRPARCYRYCKNKCYPKSRYNRGVPDPKIKIFDLGKKKALCDEFPACVHLLSGEIEQI 196
M RRPARCYRYCKNK YPKSRYNR VPD KI+IFDLG+K+A DEFP C+HL+S E EQI
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 197 SSEALEAARICANKYLVKRCGKDSFHLRVRTHPYHVIRINKMLSCAGADRLQTGMRGAFG 376
+SEALEAARICANKYLVK GKDSFHLRVR HP+HV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 377 KPLGVVARVKIGQPIFSVRGREVHVDHMIEAFRRAKMKFPGQQKVVVSRMYGFSKWPKDE 556
KP G+VARV IGQ + SVR ++ IEA RR + KFPGQQ+++VS+ +GFS++ +DE
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 557 YLKLRQTGVLYPDGVNVKYLPDKGSL 634
Y++ R G + PDG K+L +GSL
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,200,877
Number of Sequences: 369166
Number of extensions: 1594901
Number of successful extensions: 4383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4354
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)