Planaria EST Database

DrC_00993

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00993
         (1206 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27393|CO4A2_ASCSU  Collagen alpha 2(IV) chain precursor       142   2e-33
sp|P17140|CO4A2_CAEEL  Collagen alpha 2(IV) chain precursor ...   142   2e-33
sp|P53420|CO4A4_HUMAN  Collagen alpha 4(IV) chain precursor       142   2e-33
sp|P08122|CO4A2_MOUSE  Collagen alpha 2(IV) chain precursor       141   4e-33
sp|P08572|CO4A2_HUMAN  Collagen alpha 2(IV) chain precursor       140   6e-33
sp|Q7SIB3|CO4A2_BOVIN  Collagen alpha 2(IV) chain                 140   9e-33
sp|P29400|CO4A5_HUMAN  Collagen alpha 5(IV) chain precursor       139   1e-32
sp|Q28084|CO4A3_BOVIN  Collagen alpha 3(IV) chain                 139   2e-32
sp|P02463|CO4A1_MOUSE  Collagen alpha 1(IV) chain precursor       139   2e-32
sp|Q28247|CO4A5_CANFA  Collagen alpha 5(IV) chain precursor       139   2e-32

>sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor
          Length = 1763

 Score =  142 bits (358), Expect = 2e-33
 Identities = 73/191 (38%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
            G   SCLS+F+ MPF  C  +  C+   R+D+SYWLS+  P   +P+    +   +S+C 
Sbjct: 1576 GHAGSCLSRFSTMPFLFCDVNNVCNYASRNDKSYWLSTTAPIPMMPVSEGGIEPYISRCA 1635

Query: 605  VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
            VCE+P    A HSQT +  +  CP  W  LW GYSF MH+ AG + GGQ+LSSPGSC++ 
Sbjct: 1636 VCEAPANVIAVHSQTIQIPN--CPNGWNSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLED 1693

Query: 782  FKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISR 961
            F+  P IECN    +CH++++  +F+L ++         ES+ L+      +     +SR
Sbjct: 1694 FRATPFIECNGARGTCHYFANKFSFWLTTIEDDQQFRIPESETLKAGSLRTR-----VSR 1748

Query: 962  CVVCTKYKNFQ 994
            C VC +  + Q
Sbjct: 1749 CQVCIRSPDVQ 1759


 Score = 48.1 bits (113), Expect = 5e-05
 Identities = 33/112 (29%), Positives = 50/112 (44%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT       CP   V+LW GYS +      KS  Q L   GSC+  F   P + C+  
Sbjct: 1539 HSQTSEVPQ--CPPGMVKLWDGYSLLYIEGNEKSHNQDLGHAGSCLSRFSTMPFLFCDVN 1596

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
             + C++ S  +  Y       + ++T     + +S+  ++     ISRC VC
Sbjct: 1597 -NVCNYASRNDKSY-------WLSTTAPIPMMPVSEGGIEPY---ISRCAVC 1637

>sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor (Lethal protein 2)
          Length = 1758

 Score =  142 bits (358), Expect = 2e-33
 Identities = 72/186 (38%), Positives = 108/186 (58%), Gaps = 2/186 (1%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
            G   SCL +F+ MPF  C  +  C+   R+++SYWLS+ E    +P++  ++   +S+C 
Sbjct: 1574 GHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNEREIEPYISRCA 1633

Query: 605  VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
            VCE+P    A HSQT +  +  CP  W  LW GYSF MH+ AG + GGQ+ SSPGSC++ 
Sbjct: 1634 VCEAPANTIAVHSQTIQIPN--CPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLED 1691

Query: 782  FKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISR 961
            F+  P IECN    SCH++++  +F+L ++         ESQ L+  +   +     +SR
Sbjct: 1692 FRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTR-----VSR 1746

Query: 962  CVVCTK 979
            C VC K
Sbjct: 1747 CQVCVK 1752


 Score = 54.7 bits (130), Expect = 5e-07
 Identities = 38/112 (33%), Positives = 49/112 (43%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT       CPE   +LW GYS +      KS  Q L   GSC+Q F   P + C+  
Sbjct: 1537 HSQTTEVP--RCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFN 1594

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
             + C++ S     Y  S           S+ + M   N +EI   ISRC VC
Sbjct: 1595 -NVCNYASRNEKSYWLS----------TSEAIPMMPVNEREIEPYISRCAVC 1635


 Score = 39.3 bits (90), Expect = 0.023
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
 Frame = +2

Query: 431  SPSSCLSKFNIMPFAHCL-RDGSCSTGIRSDRSYWLSSLE-------PESVPMDVSQMHK 586
            SP SCL  F   PF  C    GSC     +  S+WL++++       PES  +    +  
Sbjct: 1684 SPGSCLEDFRATPFIECNGARGSCHY-FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRT 1742

Query: 587  RLSQCVVCESPT 622
            R+S+C VC   T
Sbjct: 1743 RVSRCQVCVKST 1754

>sp|P53420|CO4A4_HUMAN Collagen alpha 4(IV) chain precursor
          Length = 1690

 Score =  142 bits (357), Expect = 2e-33
 Identities = 75/188 (39%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
            G   SCL  F+ +PFA+C     C    R+DRSYWL+S  P   +P+    +   +S+C 
Sbjct: 1508 GLAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLASAAPLPMMPLSEEAIRPYVSRCA 1567

Query: 605  VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
            VCE+P Q  A HSQ +  S   CP+ W  LW GYSF+MH+ AG + GGQAL SPGSC++ 
Sbjct: 1568 VCEAPAQAVAVHSQDQ--SIPPCPQTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLED 1625

Query: 782  FKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQF-FNSTTESQYLEMSDSNMKEILDSIS 958
            F+  P +EC     +CH +++  +F+L ++     F+S      L+ S +  ++    IS
Sbjct: 1626 FRAAPFLECQGRQGTCHFFANKYSFWLTTVKADLQFSSAPAPDTLKESQAQRQK----IS 1681

Query: 959  RCVVCTKY 982
            RC VC KY
Sbjct: 1682 RCQVCVKY 1689


 Score = 47.4 bits (111), Expect = 8e-05
 Identities = 32/112 (28%), Positives = 48/112 (42%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT++  + TCP    +LW GYS +      K+  Q L   GSC+  F   P   CN  
Sbjct: 1471 HSQTDQ--EPTCPLGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIH 1528

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
                +   +  +++L S +            L M   + + I   +SRC VC
Sbjct: 1529 QVCHYAQRNDRSYWLASAAP-----------LPMMPLSEEAIRPYVSRCAVC 1569

>sp|P08122|CO4A2_MOUSE Collagen alpha 2(IV) chain precursor
          Length = 1707

 Score =  141 bits (355), Expect = 4e-33
 Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 2/186 (1%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
            G   SCL++F+ MPF +C     C    R+D+SYWLS+  P   +P+   ++   +S+C 
Sbjct: 1527 GLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEEIKPYISRCS 1586

Query: 605  VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
            VCE+P    A HSQ        CP  W  LW GYSF+M+++AG + GGQ+L SPGSC++ 
Sbjct: 1587 VCEAPAVAIAVHSQDTSIPH--CPAGWRSLWIGYSFLMYTAAGDEGGGQSLVSPGSCLED 1644

Query: 782  FKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISR 961
            F+  P IECN G  +CH++++  +F+L ++  Q F ST  +  L+        I   ISR
Sbjct: 1645 FRATPFIECNGGRGTCHYFANKYSFWLTTIPEQNFQSTPSADTLKAG-----LIRTHISR 1699

Query: 962  CVVCTK 979
            C VC K
Sbjct: 1700 CQVCMK 1705


 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 36/112 (32%), Positives = 49/112 (43%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT++  +  CP    +LW GYS +      K+  Q L   GSC+  F   P + CN G
Sbjct: 1490 HSQTDQ--EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG 1547

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
               C++ S  +  Y  S +            L M     +EI   ISRC VC
Sbjct: 1548 -DVCYYASRNDKSYWLSTTAP----------LPMMPVAEEEIKPYISRCSVC 1588

>sp|P08572|CO4A2_HUMAN Collagen alpha 2(IV) chain precursor
          Length = 1712

 Score =  140 bits (354), Expect = 6e-33
 Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 2/186 (1%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
            G   SCL++F+ MPF +C     C    R+D+SYWLS+  P   +P+   ++   +S+C 
Sbjct: 1532 GLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEDEIKPYISRCS 1591

Query: 605  VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
            VCE+P    A HSQ    S   CP  W  LW GYSF+MH++AG + GGQ+L SPGSC++ 
Sbjct: 1592 VCEAPAIAIAVHSQD--VSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLED 1649

Query: 782  FKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISR 961
            F+  P IECN G  +CH++++  +F+L ++  Q F  +  +  L+        I   ISR
Sbjct: 1650 FRATPFIECNGGRGTCHYYANKYSFWLTTIPEQSFQGSPSADTLKAG-----LIRTHISR 1704

Query: 962  CVVCTK 979
            C VC K
Sbjct: 1705 CQVCMK 1710


 Score = 51.2 bits (121), Expect = 6e-06
 Identities = 36/112 (32%), Positives = 48/112 (42%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT++  +  CP    +LW GYS +      K+  Q L   GSC+  F   P + CN G
Sbjct: 1495 HSQTDQ--EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG 1552

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
               C++ S  +  Y  S +            L M      EI   ISRC VC
Sbjct: 1553 -DVCYYASRNDKSYWLSTTAP----------LPMMPVAEDEIKPYISRCSVC 1593

>sp|Q7SIB3|CO4A2_BOVIN Collagen alpha 2(IV) chain
          Length = 227

 Score =  140 bits (352), Expect = 9e-33
 Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 2/186 (1%)
 Frame = +2

Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
           G   SCL++F+ MPF +C     C    R+D+SYWLS+  P   +P+    +   +S+C 
Sbjct: 47  GLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCS 106

Query: 605 VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
           VCE+P    A HSQ    S   CP  W  LW GYSF+MH++AG + GGQ+L SPGSC++ 
Sbjct: 107 VCEAPAVAIAVHSQD--VSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLED 164

Query: 782 FKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISR 961
           F+  P IECN    +CH++++  +F+L ++  Q F  T  +  L+        I   ISR
Sbjct: 165 FRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAG-----LIRTHISR 219

Query: 962 CVVCTK 979
           C VC K
Sbjct: 220 CQVCMK 225


 Score = 50.8 bits (120), Expect = 8e-06
 Identities = 35/112 (31%), Positives = 49/112 (43%)
 Frame = +2

Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
           HSQT++  +  CP    +LW GYS +      K+  Q L   GSC+  F   P + CN G
Sbjct: 10  HSQTDQ--EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG 67

Query: 818 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
              C++ S  +  Y  S +            L M     ++I   ISRC VC
Sbjct: 68  -DVCYYASRNDKSYWLSTTAP----------LPMMPVAEEDIRPYISRCSVC 108

>sp|P29400|CO4A5_HUMAN Collagen alpha 5(IV) chain precursor
          Length = 1685

 Score =  139 bits (351), Expect = 1e-32
 Identities = 75/188 (39%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEPESV---PMDVSQMHKRLSQ 598
            G+  SCL +F+ MPF  C  +  C+   R+D SYWLS+ EP  +   P+    +   +S+
Sbjct: 1504 GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMQPLKGQSIQPFISR 1563

Query: 599  CVVCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCI 775
            C VCE+P    A HSQT +     CP+ W  LW GYSF+MH+SAG  G GQAL+SPGSC+
Sbjct: 1564 CAVCEAPAVVIAVHSQTIQIPH--CPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSCL 1621

Query: 776  QYFKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSI 955
            + F+  P IEC +G  +C+++++  +F+L ++      S  +S+ L+  D   +     I
Sbjct: 1622 EEFRSAPFIEC-HGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTR-----I 1675

Query: 956  SRCVVCTK 979
            SRC VC K
Sbjct: 1676 SRCQVCMK 1683


 Score = 48.1 bits (113), Expect = 5e-05
 Identities = 31/112 (27%), Positives = 55/112 (49%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT       CP+  +Q+++G+S +      ++ GQ L + GSC++ F   P + CN  
Sbjct: 1467 HSQTTDAPQ--CPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCN-- 1522

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
            +++  +++  N +        ++ ST E   + M     + I   ISRC VC
Sbjct: 1523 INNVCNFASRNDY-------SYWLSTPEPMPMSMQPLKGQSIQPFISRCAVC 1567


 Score = 43.5 bits (101), Expect = 0.001
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
 Frame = +2

Query: 431  SPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLE-------PESVPMDVSQMHKR 589
            SP SCL +F   PF  C   G+C+    S  S+WL++++       P+S  +    +  R
Sbjct: 1616 SPGSCLEEFRSAPFIECHGRGTCNYYANS-YSFWLATVDVSDMFSKPQSETLKAGDLRTR 1674

Query: 590  LSQCVVCESPT 622
            +S+C VC   T
Sbjct: 1675 ISRCQVCMKRT 1685

>sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain
          Length = 471

 Score =  139 bits (350), Expect = 2e-32
 Identities = 79/195 (40%), Positives = 116/195 (59%), Gaps = 9/195 (4%)
 Frame = +2

Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEPESVPMDVSQMHKR-----L 592
           G+  SCL +F  MPF  C  +  C+   R+D SYWLS+  P  +PMD++ +  R     +
Sbjct: 289 GTLGSCLQRFTTMPFLFCNINDVCNFASRNDYSYWLST--PAMIPMDMAPITGRALEPYI 346

Query: 593 SQCVVCESPTQPYAFHSQTERFSDVT-CPENWVQLWKGYSFVMHSSAGKSG-GQALSSPG 766
           S+C VCE P    A HSQT   +D+  CP  W+ LWKG+SF+M +SAG  G GQAL+SPG
Sbjct: 347 SRCTVCEGPAIAIAVHSQT---TDIPPCPAGWISLWKGFSFIMFTSAGSEGAGQALASPG 403

Query: 767 SCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMK--E 940
           SC++ F+  P IEC +G  +C+++S+  +F+L SL         +  + +   S +K  E
Sbjct: 404 SCLEEFRASPFIEC-HGRGTCNYYSNSYSFWLASLD-------PKRMFRKPIPSTVKAGE 455

Query: 941 ILDSISRCVVCTKYK 985
           + + ISRC VC K +
Sbjct: 456 LENIISRCQVCMKMR 470


 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 31/112 (27%), Positives = 53/112 (47%)
 Frame = +2

Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
           HSQT      +CPE    L+ G+S +      ++ GQ L + GSC+Q F   P + CN  
Sbjct: 252 HSQTTAIP--SCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTTMPFLFCN-- 307

Query: 818 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
           ++   +++  N +        ++ ST     ++M+    + +   ISRC VC
Sbjct: 308 INDVCNFASRNDY-------SYWLSTPAMIPMDMAPITGRALEPYISRCTVC 352

>sp|P02463|CO4A1_MOUSE Collagen alpha 1(IV) chain precursor
          Length = 1669

 Score =  139 bits (349), Expect = 2e-32
 Identities = 75/189 (39%), Positives = 107/189 (56%), Gaps = 5/189 (2%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP---ESVPMDVSQMHKRLSQ 598
            G+  SCL KF+ MPF  C  +  C+   R+D SYWLS+ EP      P+    +   +S+
Sbjct: 1488 GTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISR 1547

Query: 599  CVVCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCI 775
            C VCE+P    A HSQT +     CP  W  LW GYSFVMH+SAG  G GQAL+SPGSC+
Sbjct: 1548 CAVCEAPAMVMAVHSQTIQIPQ--CPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCL 1605

Query: 776  QYFKFHPLIECNNGMSSCHHWSDGNAFYLRSLS-GQFFNSTTESQYLEMSDSNMKEILDS 952
            + F+  P IEC +G  +C+++++  +F+L ++   + F   T S           E+   
Sbjct: 1606 EEFRSAPFIEC-HGRGTCNYYANAYSFWLATIERSEMFKKPTPSTL------KAGELRTH 1658

Query: 953  ISRCVVCTK 979
            +SRC VC +
Sbjct: 1659 VSRCQVCMR 1667


 Score = 48.1 bits (113), Expect = 5e-05
 Identities = 33/112 (29%), Positives = 53/112 (47%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT    D  CP     L+ GYS +      ++ GQ L + GSC++ F   P + CN  
Sbjct: 1451 HSQTT--DDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCN-- 1506

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
            +++  +++  N +        ++ ST E   + M+  +   I   ISRC VC
Sbjct: 1507 INNVCNFASRNDY-------SYWLSTPEPMPMSMAPISGDNIRPFISRCAVC 1551

>sp|Q28247|CO4A5_CANFA Collagen alpha 5(IV) chain precursor
          Length = 1691

 Score =  139 bits (349), Expect = 2e-32
 Identities = 75/188 (39%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
 Frame = +2

Query: 428  GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEPESV---PMDVSQMHKRLSQ 598
            G+  SCL +F+ MPF  C  +  C+   R+D SYWLS+ EP  +   P+    +   +S+
Sbjct: 1510 GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKGQSIQPFISR 1569

Query: 599  CVVCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCI 775
            C VCE+P    A HSQT +     CP  W  LW GYSF+MH+SAG  G GQAL+SPGSC+
Sbjct: 1570 CAVCEAPAVVIAVHSQTIQIPH--CPHGWDSLWIGYSFMMHTSAGAEGSGQALASPGSCL 1627

Query: 776  QYFKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSI 955
            + F+  P IEC +G  +C+++++  +F+L ++      S  +S+ L+  D   +     I
Sbjct: 1628 EEFRSAPFIEC-HGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTR-----I 1681

Query: 956  SRCVVCTK 979
            SRC VC K
Sbjct: 1682 SRCQVCMK 1689


 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 32/112 (28%), Positives = 54/112 (48%)
 Frame = +2

Query: 638  HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
            HSQT       CP   VQ+++G+S +      ++ GQ L + GSC++ F   P + CN  
Sbjct: 1473 HSQTTDAPQ--CPHGTVQIYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCN-- 1528

Query: 818  MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 973
            +++  +++  N +        ++ ST E   + M     + I   ISRC VC
Sbjct: 1529 INNVCNFASRNDY-------SYWLSTPEPMPMSMEPLKGQSIQPFISRCAVC 1573


 Score = 43.5 bits (101), Expect = 0.001
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
 Frame = +2

Query: 431  SPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLE-------PESVPMDVSQMHKR 589
            SP SCL +F   PF  C   G+C+    S  S+WL++++       P+S  +    +  R
Sbjct: 1622 SPGSCLEEFRSAPFIECHGRGTCNYYANS-YSFWLATVDVSDMFSKPQSETLKAGDLRTR 1680

Query: 590  LSQCVVCESPT 622
            +S+C VC   T
Sbjct: 1681 ISRCQVCMKRT 1691

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,791,823
Number of Sequences: 369166
Number of extensions: 2893996
Number of successful extensions: 6307
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6214
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 13674218400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00993

  1. Dr_sW_025_A12
  2. Dr_sW_010_A05