Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_A12
(884 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor 135 2e-31
sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain 133 8e-31
sp|P02463|CO4A1_MOUSE Collagen alpha 1(IV) chain precursor 132 1e-30
sp|P02462|CO4A1_HUMAN Collagen alpha 1(IV) chain precursor 131 2e-30
sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor ... 131 2e-30
sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor 131 2e-30
sp|Q7SIB2|CO4A1_BOVIN Collagen alpha 1(IV) chain 131 2e-30
sp|P08572|CO4A2_HUMAN Collagen alpha 2(IV) chain precursor 131 3e-30
sp|Q14031|CO4A6_HUMAN Collagen alpha 6(IV) chain precursor 130 4e-30
sp|Q01955|CO4A3_HUMAN Collagen alpha 3(IV) chain precursor ... 130 6e-30
>sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor
Length = 1763
Score = 135 bits (340), Expect = 2e-31
Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
G SCLS+F+ MPF C + C+ R+D+SYWLS+ P +P+ + +S+C
Sbjct: 1576 GHAGSCLSRFSTMPFLFCDVNNVCNYASRNDKSYWLSTTAPIPMMPVSEGGIEPYISRCA 1635
Query: 605 VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
VCE+P A HSQT + + CP W LW GYSF MH+ AG + GGQ+LSSPGSC++
Sbjct: 1636 VCEAPANVIAVHSQTIQIPN--CPNGWNSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLED 1693
Query: 782 FKFHPLIECNNGMSSCHHWSDGNAFYLRSL 871
F+ P IECN +CH++++ +F+L ++
Sbjct: 1694 FRATPFIECNGARGTCHYFANKFSFWLTTI 1723
Score = 42.7 bits (99), Expect = 0.001
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECN 811
HSQT CP V+LW GYS + KS Q L GSC+ F P + C+
Sbjct: 1539 HSQTSEVPQ--CPPGMVKLWDGYSLLYIEGNEKSHNQDLGHAGSCLSRFSTMPFLFCD 1594
Score = 42.0 bits (97), Expect = 0.002
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Frame = +2
Query: 431 SPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLE-------PESVPMDVSQMHKR 589
SP SCL F PF C + S+WL+++E PES + + R
Sbjct: 1686 SPGSCLEDFRATPFIECNGARGTCHYFANKFSFWLTTIEDDQQFRIPESETLKAGSLRTR 1745
Query: 590 LSQCVVC-ESP-TQPY 631
+S+C VC SP QPY
Sbjct: 1746 VSRCQVCIRSPDVQPY 1761
>sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain
Length = 471
Score = 133 bits (334), Expect = 8e-31
Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEPESVPMDVSQMHKR-----L 592
G+ SCL +F MPF C + C+ R+D SYWLS+ P +PMD++ + R +
Sbjct: 289 GTLGSCLQRFTTMPFLFCNINDVCNFASRNDYSYWLST--PAMIPMDMAPITGRALEPYI 346
Query: 593 SQCVVCESPTQPYAFHSQTERFSDVT-CPENWVQLWKGYSFVMHSSAGKSG-GQALSSPG 766
S+C VCE P A HSQT +D+ CP W+ LWKG+SF+M +SAG G GQAL+SPG
Sbjct: 347 SRCTVCEGPAIAIAVHSQT---TDIPPCPAGWISLWKGFSFIMFTSAGSEGAGQALASPG 403
Query: 767 SCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLRSL 871
SC++ F+ P IEC +G +C+++S+ +F+L SL
Sbjct: 404 SCLEEFRASPFIEC-HGRGTCNYYSNSYSFWLASL 437
Score = 42.4 bits (98), Expect = 0.002
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +2
Query: 431 SPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-----ESVPMDV--SQMHKR 589
SP SCL +F PF C G+C+ S S+WL+SL+P + +P V ++
Sbjct: 401 SPGSCLEEFRASPFIECHGRGTCNYYSNS-YSFWLASLDPKRMFRKPIPSTVKAGELENI 459
Query: 590 LSQCVVC 610
+S+C VC
Sbjct: 460 ISRCQVC 466
Score = 40.4 bits (93), Expect = 0.007
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECN 811
HSQT +CPE L+ G+S + ++ GQ L + GSC+Q F P + CN
Sbjct: 252 HSQTTAIP--SCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTTMPFLFCN 307
>sp|P02463|CO4A1_MOUSE Collagen alpha 1(IV) chain precursor
Length = 1669
Score = 132 bits (332), Expect = 1e-30
Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP---ESVPMDVSQMHKRLSQ 598
G+ SCL KF+ MPF C + C+ R+D SYWLS+ EP P+ + +S+
Sbjct: 1488 GTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISR 1547
Query: 599 CVVCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCI 775
C VCE+P A HSQT + CP W LW GYSFVMH+SAG G GQAL+SPGSC+
Sbjct: 1548 CAVCEAPAMVMAVHSQTIQIPQ--CPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCL 1605
Query: 776 QYFKFHPLIECNNGMSSCHHWSDGNAFYLRSL 871
+ F+ P IEC +G +C+++++ +F+L ++
Sbjct: 1606 EEFRSAPFIEC-HGRGTCNYYANAYSFWLATI 1636
Score = 39.7 bits (91), Expect = 0.011
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECN 811
HSQT D CP L+ GYS + ++ GQ L + GSC++ F P + CN
Sbjct: 1451 HSQTT--DDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCN 1506
>sp|P02462|CO4A1_HUMAN Collagen alpha 1(IV) chain precursor
Length = 1669
Score = 131 bits (330), Expect = 2e-30
Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP---ESVPMDVSQMHKRLSQ 598
G+ SCL KF+ MPF C + C+ R+D SYWLS+ EP P+ + +S+
Sbjct: 1488 GTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISR 1547
Query: 599 CVVCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCI 775
C VCE+P A HSQT + CP W LW GYSFVMH+SAG G GQAL+SPGSC+
Sbjct: 1548 CAVCEAPAMVMAVHSQTIQIP--PCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCL 1605
Query: 776 QYFKFHPLIECNNGMSSCHHWSDGNAFYLRSL 871
+ F+ P IEC +G +C+++++ +F+L ++
Sbjct: 1606 EEFRSAPFIEC-HGRGTCNYYANAYSFWLATI 1636
Score = 40.4 bits (93), Expect = 0.007
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECN 811
HSQT D CP L+ GYS + ++ GQ L + GSC++ F P + CN
Sbjct: 1451 HSQT--IDDPQCPSGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCN 1506
>sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor (Lethal protein 2)
Length = 1758
Score = 131 bits (330), Expect = 2e-30
Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
G SCL +F+ MPF C + C+ R+++SYWLS+ E +P++ ++ +S+C
Sbjct: 1574 GHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNEREIEPYISRCA 1633
Query: 605 VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
VCE+P A HSQT + + CP W LW GYSF MH+ AG + GGQ+ SSPGSC++
Sbjct: 1634 VCEAPANTIAVHSQTIQIPN--CPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLED 1691
Query: 782 FKFHPLIECNNGMSSCHHWSDGNAFYLRSL 871
F+ P IECN SCH++++ +F+L ++
Sbjct: 1692 FRATPFIECNGARGSCHYFANKFSFWLTTI 1721
Score = 45.1 bits (105), Expect = 3e-04
Identities = 28/79 (35%), Positives = 36/79 (45%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
HSQT CPE +LW GYS + KS Q L GSC+Q F P + C+
Sbjct: 1537 HSQTTEVP--RCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFN 1594
Query: 818 MSSCHHWSDGNAFYLRSLS 874
+ C++ S Y S S
Sbjct: 1595 -NVCNYASRNEKSYWLSTS 1612
Score = 39.3 bits (90), Expect = 0.015
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +2
Query: 431 SPSSCLSKFNIMPFAHCL-RDGSCSTGIRSDRSYWLSSLE-------PESVPMDVSQMHK 586
SP SCL F PF C GSC + S+WL++++ PES + +
Sbjct: 1684 SPGSCLEDFRATPFIECNGARGSCHY-FANKFSFWLTTIDNDSEFKVPESQTLKSGNLRT 1742
Query: 587 RLSQCVVCESPT 622
R+S+C VC T
Sbjct: 1743 RVSRCQVCVKST 1754
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
Length = 1759
Score = 131 bits (330), Expect = 2e-30
Identities = 66/148 (44%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEPESV---PMDVSQMHKRLSQ 598
G P SCLSKFN MPF C + C R+D S+WLS+ EP + P+ + + +S+
Sbjct: 1578 GQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISR 1637
Query: 599 CVVCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCI 775
C VCE PTQ A HSQ S CP+ W +W GYSFVMH++AG G GQ+L SPGSC+
Sbjct: 1638 CAVCEVPTQIIAVHSQDT--SVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCL 1695
Query: 776 QYFKFHPLIECNNGMSSCHHWSDGNAFY 859
+ F+ P IEC +G +C++++ + F+
Sbjct: 1696 EEFRAVPFIEC-HGRGTCNYYATNHGFW 1722
Score = 54.7 bits (130), Expect = 3e-07
Identities = 27/81 (33%), Positives = 42/81 (51%)
Frame = +2
Query: 614 SPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFH 793
+P++ + F ++ + CP QLW+GYS + G++ GQ L PGSC+ F
Sbjct: 1531 APSRGFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTM 1590
Query: 794 PLIECNNGMSSCHHWSDGNAF 856
P + CN M+S H S N +
Sbjct: 1591 PFMFCN--MNSVCHVSSRNDY 1609
>sp|Q7SIB2|CO4A1_BOVIN Collagen alpha 1(IV) chain
Length = 229
Score = 131 bits (330), Expect = 2e-30
Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP---ESVPMDVSQMHKRLSQ 598
G+ SCL KF+ MPF C + C+ R+D SYWLS+ EP P+ + +S+
Sbjct: 48 GTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISR 107
Query: 599 CVVCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCI 775
C VCE+P A HSQT + CP W LW GYSFVMH+SAG G GQAL+SPGSC+
Sbjct: 108 CAVCEAPAMVMAVHSQTIQIPQ--CPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCL 165
Query: 776 QYFKFHPLIECNNGMSSCHHWSDGNAFYLRSL 871
+ F+ P IEC +G +C+++++ +F+L ++
Sbjct: 166 EEFRSAPFIEC-HGRGTCNYYANAYSFWLATI 196
Score = 39.7 bits (91), Expect = 0.011
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECN 811
HSQT D CP L+ GYS + ++ GQ L + GSC++ F P + CN
Sbjct: 11 HSQTT--DDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCN 66
>sp|P08572|CO4A2_HUMAN Collagen alpha 2(IV) chain precursor
Length = 1712
Score = 131 bits (329), Expect = 3e-30
Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 2/153 (1%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
G SCL++F+ MPF +C C R+D+SYWLS+ P +P+ ++ +S+C
Sbjct: 1532 GLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEDEIKPYISRCS 1591
Query: 605 VCESPTQPYAFHSQTERFSDVTCPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSCIQY 781
VCE+P A HSQ S CP W LW GYSF+MH++AG + GGQ+L SPGSC++
Sbjct: 1592 VCEAPAIAIAVHSQD--VSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLED 1649
Query: 782 FKFHPLIECNNGMSSCHHWSDGNAFYLRSLSGQ 880
F+ P IECN G +CH++++ +F+L ++ Q
Sbjct: 1650 FRATPFIECNGGRGTCHYYANKYSFWLTTIPEQ 1682
Score = 45.8 bits (107), Expect = 2e-04
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
HSQT++ + CP +LW GYS + K+ Q L GSC+ F P + CN G
Sbjct: 1495 HSQTDQ--EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG 1552
Query: 818 MSSCHHWSDGNAFY 859
C++ S + Y
Sbjct: 1553 -DVCYYASRNDKSY 1565
>sp|Q14031|CO4A6_HUMAN Collagen alpha 6(IV) chain precursor
Length = 1691
Score = 130 bits (328), Expect = 4e-30
Identities = 64/153 (41%), Positives = 99/153 (64%), Gaps = 5/153 (3%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCV 604
G SCL +F+ MPF +C + C R+D+SYWLS+ P +P+ +Q+ + +S+C
Sbjct: 1510 GFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVSQTQIPQYISRCS 1569
Query: 605 VCESPTQPYAFHSQTERFSDVT---CPENWVQLWKGYSFVMHSSAG-KSGGQALSSPGSC 772
VCE+P+Q A HSQ D+T CP W LW GYSF+MH++AG + GGQ+L SPGSC
Sbjct: 1570 VCEAPSQAIAVHSQ-----DITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSC 1624
Query: 773 IQYFKFHPLIECNNGMSSCHHWSDGNAFYLRSL 871
++ F+ P IEC+ +CH++++ +F+L ++
Sbjct: 1625 LEDFRATPFIECSGARGTCHYFANKYSFWLTTV 1657
Score = 43.9 bits (102), Expect = 6e-04
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 817
HSQ+E+ CP QLW GYS + K+ Q L GSC+ F P I CN
Sbjct: 1473 HSQSEQVPP--CPIGMSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNIN 1530
Query: 818 MSSCHH 835
CH+
Sbjct: 1531 -EVCHY 1535
Score = 42.0 bits (97), Expect = 0.002
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = +2
Query: 431 SPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLE--------PESVPMDVSQMHK 586
SP SCL F PF C + S+WL+++E P S + Q+H
Sbjct: 1620 SPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGELPVSETLKAGQLHT 1679
Query: 587 RLSQCVVC 610
R+S+C VC
Sbjct: 1680 RVSRCQVC 1687
>sp|Q01955|CO4A3_HUMAN Collagen alpha 3(IV) chain precursor (Goodpasture antigen)
Length = 1670
Score = 130 bits (326), Expect = 6e-30
Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 7/156 (4%)
Frame = +2
Query: 428 GSPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEPESVPMDVSQMHKR-----L 592
G+ SCL +F MPF C + C+ R+D SYWLS+ P +PM+++ + R +
Sbjct: 1488 GTLGSCLQRFTTMPFLFCNVNDVCNFASRNDYSYWLST--PALMPMNMAPITGRALEPYI 1545
Query: 593 SQCVVCESPTQPYAFHSQTERFSDVT-CPENWVQLWKGYSFVMHSSAGKSG-GQALSSPG 766
S+C VCE P A HSQT +D+ CP W+ LWKG+SF+M +SAG G GQAL+SPG
Sbjct: 1546 SRCTVCEGPAIAIAVHSQT---TDIPPCPHGWISLWKGFSFIMFTSAGSEGTGQALASPG 1602
Query: 767 SCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLRSLS 874
SC++ F+ P +EC +G +C+++S+ +F+L SL+
Sbjct: 1603 SCLEEFRASPFLEC-HGRGTCNYYSNSYSFWLASLN 1637
Score = 45.4 bits (106), Expect = 2e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +2
Query: 638 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECN 811
HSQT +CPE V L+ G+SF+ ++ GQ L + GSC+Q F P + CN
Sbjct: 1451 HSQTTAIP--SCPEGTVPLYSGFSFLFVQGNQRAHGQDLGTLGSCLQRFTTMPFLFCN 1506
Score = 45.1 bits (105), Expect = 3e-04
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +2
Query: 431 SPSSCLSKFNIMPFAHCLRDGSCSTGIRSDRSYWLSSLEPE-----SVPMDV--SQMHKR 589
SP SCL +F PF C G+C+ S S+WL+SL PE +P V ++ K
Sbjct: 1600 SPGSCLEEFRASPFLECHGRGTCNYYSNS-YSFWLASLNPERMFRKPIPSTVKAGELEKI 1658
Query: 590 LSQCVVC 610
+S+C VC
Sbjct: 1659 ISRCQVC 1665
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,758,194
Number of Sequences: 369166
Number of extensions: 2243559
Number of successful extensions: 5082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5009
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)