Planaria EST Database


DrC_00990

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00990
         (733 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V496|APLP_DROME  Apolipophorins precursor (Retinoid- an...    32   1.7  
sp|P69480|RRPP_RABVM  Phosphoprotein (P protein) (M1) >gi|61...    31   3.0  
sp|P16286|RRPP_RABVS  Phosphoprotein (P protein) (M1)              31   3.0  
sp|Q57766|FTR_METJA  Formylmethanofuran--tetrahydromethanopt...    30   8.6  
>sp|Q9V496|APLP_DROME Apolipophorins precursor (Retinoid- and fatty acid-binding
            glycoprotein) [Contains: Apolipophorin-2 (Apolipophorin
            II) (ApoL2); Apolipophorin-1 (Apolipophorin I) (ApoL1)]
          Length = 3351

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +3

Query: 453  FDGAIEIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIKSEQGDNKSFLSKYWYYLLPI 632
            F+ A E+  ++  Q  ++  +P  SE+L+KL      K+K E  DN+ ++ +    L+  
Sbjct: 2649 FEKATELTNSLFDQINILPQTPETSEFLQKLHDYLIAKLKQEHIDNEKYIEELGQLLIKA 2708

Query: 633  V 635
            V
Sbjct: 2709 V 2709
>sp|P69480|RRPP_RABVM Phosphoprotein (P protein) (M1)
 sp|P69479|RRPP_RABVE Phosphoprotein (P protein) (M1)
          Length = 297

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +3

Query: 393 NIVGLYISTKEQQCNDEVIDFDGAIEIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIK 572
           +++   I   +     E I+ D   E    +HL     G SPN  E  K  E + RE  +
Sbjct: 26  DLINRNIEDNQAHLQGEPIEVDNLPEDMGRLHLDD---GKSPNPGEMAKVGEGKYREDFQ 82

Query: 573 SEQGDNKSFLSKYWYYLLPIVILLVMTS 656
            ++G++ SFL + +   + + I+  M S
Sbjct: 83  MDEGEDPSFLFQSYLENVGVQIVRQMRS 110
>sp|P16286|RRPP_RABVS Phosphoprotein (P protein) (M1)
          Length = 297

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +3

Query: 393 NIVGLYISTKEQQCNDEVIDFDGAIEIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIK 572
           +++   I   +     E I+ D   E    +HL     G SPN  E  K  E + RE  +
Sbjct: 26  DLINRNIEDNQAHLQGEPIEVDNLPEDMGRLHLDD---GKSPNHGEIAKVGEGKYREDFQ 82

Query: 573 SEQGDNKSFLSKYWYYLLPIVILLVMTS 656
            ++G++ SFL + +   + + I+  M S
Sbjct: 83  MDEGEDPSFLFQSYLENVGVQIVRQMRS 110
>sp|Q57766|FTR_METJA Formylmethanofuran--tetrahydromethanopterin formyltransferase
           (H4MPT formyltransferase)
          Length = 301

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +3

Query: 267 NGYYKIRISGLNSQFIETSIKTCQLIASKLKVDLQVSVDGFGNIVGLY 410
           NG Y+I I G++ + ++ ++K   L A+++K   +++   +G  +G Y
Sbjct: 245 NGVYEIVIDGVDEESVKEAMKQGILAATRVKGVKKITAGNYGGKLGKY 292
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,481,547
Number of Sequences: 369166
Number of extensions: 1290534
Number of successful extensions: 3119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00990

  1. Dr_sW_024_P23
  2. Dr_sW_010_F20