Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_F20
(307 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V496|APLP_DROME Apolipophorins precursor (Retinoid- an... 32 0.46
sp|P69480|RRPP_RABVM Phosphoprotein (P protein) (M1) >gi|61... 30 2.3
sp|P16286|RRPP_RABVS Phosphoprotein (P protein) (M1) 30 2.3
sp|P14925|AMD_RAT Peptidyl-glycine alpha-amidating monooxyg... 28 6.6
sp|Q03640|YMH2_YEAST Hypothetical 171.1 kDa protein in RPL6... 28 8.6
sp|Q5E326|ENO_VIBF1 Enolase (2-phosphoglycerate dehydratase... 28 8.6
>sp|Q9V496|APLP_DROME Apolipophorins precursor (Retinoid- and fatty acid-binding
glycoprotein) [Contains: Apolipophorin-2 (Apolipophorin
II) (ApoL2); Apolipophorin-1 (Apolipophorin I) (ApoL1)]
Length = 3351
Score = 32.0 bits (71), Expect = 0.46
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 27 FDGAIEIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIKSEQGDNKSFLSKYWYYLLPI 206
F+ A E+ ++ Q ++ +P SE+L+KL K+K E DN+ ++ + L+
Sbjct: 2649 FEKATELTNSLFDQINILPQTPETSEFLQKLHDYLIAKLKQEHIDNEKYIEELGQLLIKA 2708
Query: 207 V 209
V
Sbjct: 2709 V 2709
>sp|P69480|RRPP_RABVM Phosphoprotein (P protein) (M1)
sp|P69479|RRPP_RABVE Phosphoprotein (P protein) (M1)
Length = 297
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 15 EVIDFDGAIEIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIKSEQGDNKSFLSKYWYY 194
E I+ D E +HL G SPN E K E + RE + ++G++ SFL + +
Sbjct: 42 EPIEVDNLPEDMGRLHLDD---GKSPNPGEMAKVGEGKYREDFQMDEGEDPSFLFQSYLE 98
Query: 195 LLPIVILLVMTS 230
+ + I+ M S
Sbjct: 99 NVGVQIVRQMRS 110
>sp|P16286|RRPP_RABVS Phosphoprotein (P protein) (M1)
Length = 297
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 15 EVIDFDGAIEIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIKSEQGDNKSFLSKYWYY 194
E I+ D E +HL G SPN E K E + RE + ++G++ SFL + +
Sbjct: 42 EPIEVDNLPEDMGRLHLDD---GKSPNHGEIAKVGEGKYREDFQMDEGEDPSFLFQSYLE 98
Query: 195 LLPIVILLVMTS 230
+ + I+ M S
Sbjct: 99 NVGVQIVRQMRS 110
>sp|P14925|AMD_RAT Peptidyl-glycine alpha-amidating monooxygenase precursor (PAM)
Length = 976
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 42 EIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIKSEQGDNKSFLSKYWYYLLPIVILLV 221
EIK + P + P SE K +QE++K+ +E G S + ++P+++LL
Sbjct: 829 EIKEAEAVVEPKVENKPTSSELQK---MQEKQKLSTEPGSGVSVVLITTLLVIPVLVLLA 885
Query: 222 M 224
+
Sbjct: 886 I 886
>sp|Q03640|YMH2_YEAST Hypothetical 171.1 kDa protein in RPL6A-DAK1 intergenic region
Length = 1545
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +3
Query: 93 NISEYLKKLEIQER--EKIKSEQGDNKSFLSKYWYYLLPIV 209
NI + LK++ ++E ++++S N SFLSK+W +P++
Sbjct: 255 NIRDDLKRVTVEETLSDRVESTTWLN-SFLSKFWVIYMPVL 294
>sp|Q5E326|ENO_VIBF1 Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate
hydro-lyase)
Length = 432
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 15 EVIDFDGAIEIKTNVHLQSPVIGVSPNISEYLKKLEIQEREKIKSEQGDNKSFLSK 182
E+ID G ++ VHL+S +G++ S RE ++ GD FL K
Sbjct: 11 EIIDSRGNPTVEAEVHLESGFVGMAAAPS----GASTGSREALELRDGDKARFLGK 62
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,345,175
Number of Sequences: 369166
Number of extensions: 570035
Number of successful extensions: 1673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)