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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00985
         (676 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09390|HG12_CAEEL  High mobility group protein 1.2              87   5e-17
sp|Q24537|HMG2_DROME  High mobility group protein DSP1 (Dors...    84   3e-16
sp|P10103|HMG1_BOVIN  High mobility group protein 1 (HMG-1) ...    84   4e-16
sp|P09429|HMG1_HUMAN  High mobility group protein 1 (HMG-1) ...    84   4e-16
sp|P63159|HMG1_RAT  High mobility group protein 1 (HMG-1) (H...    84   4e-16
sp|P07156|HMG1_CRIGR  High mobility group protein 1 (HMG-1) ...    84   4e-16
sp|P12682|HMG1_PIG  High mobility group protein 1 (HMG-1) (H...    83   7e-16
sp|Q9UGV6|HMG1X_HUMAN  High mobility group protein 1-like 10...    82   2e-15
sp|P40644|HMGH_STRPU  High mobility group protein 1 homolog        82   2e-15
sp|P26583|HMG2_HUMAN  High mobility group protein 2 (HMG-2)        79   8e-15

>sp|Q09390|HG12_CAEEL High mobility group protein 1.2
          Length = 235

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTD--KEKYE 176
           +R  K+P  PKRA SAFFF+  + RP+++  HPDW+VG +A+ELG++W+      K+ YE
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185

Query: 177 KKSEADKQRYEEQMSQFRA 233
           +K++ADK RY ++M  ++A
Sbjct: 186 QKAQADKDRYADEMRNYKA 204

>sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dorsal switch protein 1)
          Length = 393

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 38/78 (48%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTD--KEKYE 176
           R++IK+P  PKR+ SAFF+FC++ R KV+  +P++ VG+IAKELGR W       K+KYE
Sbjct: 262 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYE 321

Query: 177 KKSEADKQRYEEQMSQFR 230
             +E DK RYE +M++++
Sbjct: 322 SMAERDKARYEREMTEYK 339

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
 Frame = +3

Query: 9   RIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRV--GNIAKELGRLWESCTDKEK--YE 176
           R+K   +P+   +A+ +F    R + ++ HPD  V     +++    W++  DKEK  + 
Sbjct: 172 RVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFH 231

Query: 177 KKSEADKQRYEEQMSQFRAGQYVPP 251
           + +E DKQRYE +M       YVPP
Sbjct: 232 EMAEKDKQRYEAEMQ-----NYVPP 251

>sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) (High mobility group protein
           B1)
          Length = 215

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
           +++ K+P  PKR  SAFF FC EYRPK++  HP   +G++AK+LG +W   +  DK+ YE
Sbjct: 86  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145

Query: 177 KKSEADKQRYEEQMSQFRA 233
           KK+   K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +3

Query: 18  EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
           +P +P+   S++ FF    R + ++ HPD  V     +K+    W++ + KEK  +E  +
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
           +ADK RYE +M       Y+PP
Sbjct: 65  KADKARYEREMK-----TYIPP 81

>sp|P09429|HMG1_HUMAN High mobility group protein 1 (HMG-1) (High mobility group protein
           B1)
 sp|Q6YKA4|HMG1_CANFA High mobility group protein 1 (HMG-1) (High mobility group protein
           B1)
          Length = 215

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
           +++ K+P  PKR  SAFF FC EYRPK++  HP   +G++AK+LG +W   +  DK+ YE
Sbjct: 86  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145

Query: 177 KKSEADKQRYEEQMSQFRA 233
           KK+   K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +3

Query: 18  EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
           +P +P+   S++ FF    R + ++ HPD  V     +K+    W++ + KEK  +E  +
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
           +ADK RYE +M       Y+PP
Sbjct: 65  KADKARYEREMK-----TYIPP 81

>sp|P63159|HMG1_RAT High mobility group protein 1 (HMG-1) (High mobility group protein
           B1) (Amphoterin) (Heparin-binding protein p30)
 sp|P63158|HMG1_MOUSE High mobility group protein 1 (HMG-1) (High mobility group protein
           B1)
          Length = 215

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
           +++ K+P  PKR  SAFF FC EYRPK++  HP   +G++AK+LG +W   +  DK+ YE
Sbjct: 86  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145

Query: 177 KKSEADKQRYEEQMSQFRA 233
           KK+   K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +3

Query: 18  EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
           +P +P+   S++ FF    R + ++ HPD  V     +K+    W++ + KEK  +E  +
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
           +ADK RYE +M       Y+PP
Sbjct: 65  KADKARYEREMK-----TYIPP 81

>sp|P07156|HMG1_CRIGR High mobility group protein 1 (HMG-1) (High mobility group protein
           B1)
          Length = 180

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
           +++ K+P  PKR  SAFF FC EYRPK++  HP   +G++AK+LG +W   +  DK+ YE
Sbjct: 51  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 110

Query: 177 KKSEADKQRYEEQMSQFRA 233
           KK+   K++YE+ ++ +RA
Sbjct: 111 KKAAKLKEKYEKDIAAYRA 129

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 123 AKELGRLWESCTDKEK--YEKKSEADKQRYEEQMSQFRAGQYVPP 251
           +K+    W++ + KEK  +E  ++ADK RYE +M       Y+PP
Sbjct: 7   SKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK-----TYIPP 46

>sp|P12682|HMG1_PIG High mobility group protein 1 (HMG-1) (High mobility group protein
           B1)
          Length = 215

 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
           +++ K+P  PKR  SAFF FC EYRPK++  HP   +G++AK+LG +W   +  DK  YE
Sbjct: 86  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYE 145

Query: 177 KKSEADKQRYEEQMSQFRA 233
           KK+   K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +3

Query: 18  EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
           +P +P+   S++ FF    R + ++ HPD  V     +K+    W++ + KEK  +E  +
Sbjct: 5   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64

Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
           +ADK RYE +M       Y+PP
Sbjct: 65  KADKARYEREMK-----TYIPP 81

>sp|Q9UGV6|HMG1X_HUMAN High mobility group protein 1-like 10 (HMG-1L10)
          Length = 211

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
           +++ K+P  PKR  SAFF FC  YRPK++  HP   +G++AK+LG +W   +  DK+ YE
Sbjct: 86  KKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145

Query: 177 KKSEADKQRYEEQMSQFRA 233
           KK+   K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
 Frame = +3

Query: 24  GQPKRA---WSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKK 182
           G PK+     S+  FF    R   ++ HPD  V     +K+    W++ + KEK  +E  
Sbjct: 4   GDPKKLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDM 63

Query: 183 SEADKQRYEEQMSQFRAGQYVPP 251
           ++ADK  YE +M       Y+PP
Sbjct: 64  AKADKAHYEREMK-----TYIPP 81

>sp|P40644|HMGH_STRPU High mobility group protein 1 homolog
          Length = 200

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
 Frame = +3

Query: 3   RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTDKEK--YE 176
           RRR K+P  PKR  SAFF F  E R  ++  HP+W VG+IAKEL   W + T  EK  ++
Sbjct: 91  RRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPNWSVGDIAKELAVRWRAMTAGEKIPFD 150

Query: 177 KKSEADKQRYEEQMSQFRAGQYVPPVKRPRADSNGSALIAGSSSTEDPTAVSTD 338
           K +  DK+RY + M++++A     P+KR   +S+ S+  +  SS++D ++  +D
Sbjct: 151 KGAAKDKERYIKAMAEYKA--KAKPMKRQVKESSSSS--SSDSSSDDSSSDDSD 200

>sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2)
          Length = 209

 Score = 79.3 bits (194), Expect = 8e-15
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
 Frame = +3

Query: 15  KEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLW--ESCTDKEKYEKKSE 188
           K+P  PKR  SAFF FC E+RPK++  HP   +G+ AK+LG +W  +S  DK+ YE+K+ 
Sbjct: 90  KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149

Query: 189 ADKQRYEEQMSQFRAGQYVPPVKRPRADSNGSALIAGSSSTEDP 320
             K++YE+ ++ +RA        +  A   G     GS    +P
Sbjct: 150 KLKEKYEKDIAAYRA------KGKSEAGKKGPGRPTGSKKKNEP 187

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
 Frame = +3

Query: 18  EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWE--SCTDKEKYEKKS 185
           +P +P+   S++ FF    R + ++ HPD  V     +K+    W+  S  +K K+E  +
Sbjct: 5   DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64

Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
           ++DK RY+ +M       YVPP
Sbjct: 65  KSDKARYDREMK-----NYVPP 81

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,245,080
Number of Sequences: 369166
Number of extensions: 1180403
Number of successful extensions: 4404
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4354
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_024_O13
2. Dr_sW_019_O21