Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_O13
(668 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09390|HG12_CAEEL High mobility group protein 1.2 87 5e-17
sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dors... 84 3e-16
sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) ... 84 4e-16
sp|P09429|HMG1_HUMAN High mobility group protein 1 (HMG-1) ... 84 4e-16
sp|P63159|HMG1_RAT High mobility group protein 1 (HMG-1) (H... 84 4e-16
sp|P07156|HMG1_CRIGR High mobility group protein 1 (HMG-1) ... 84 4e-16
sp|P12682|HMG1_PIG High mobility group protein 1 (HMG-1) (H... 83 7e-16
sp|Q9UGV6|HMG1X_HUMAN High mobility group protein 1-like 10... 82 2e-15
sp|P40644|HMGH_STRPU High mobility group protein 1 homolog 82 2e-15
sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2) 79 8e-15
>sp|Q09390|HG12_CAEEL High mobility group protein 1.2
Length = 235
Score = 86.7 bits (213), Expect = 5e-17
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTD--KEKYE 176
+R K+P PKRA SAFFF+ + RP+++ HPDW+VG +A+ELG++W+ K+ YE
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185
Query: 177 KKSEADKQRYEEQMSQFRA 233
+K++ADK RY ++M ++A
Sbjct: 186 QKAQADKDRYADEMRNYKA 204
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dorsal switch protein 1)
Length = 393
Score = 84.0 bits (206), Expect = 3e-16
Identities = 38/78 (48%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTD--KEKYE 176
R++IK+P PKR+ SAFF+FC++ R KV+ +P++ VG+IAKELGR W K+KYE
Sbjct: 262 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYE 321
Query: 177 KKSEADKQRYEEQMSQFR 230
+E DK RYE +M++++
Sbjct: 322 SMAERDKARYEREMTEYK 339
Score = 49.7 bits (117), Expect = 7e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 9 RIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRV--GNIAKELGRLWESCTDKEK--YE 176
R+K +P+ +A+ +F R + ++ HPD V +++ W++ DKEK +
Sbjct: 172 RVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFH 231
Query: 177 KKSEADKQRYEEQMSQFRAGQYVPP 251
+ +E DKQRYE +M YVPP
Sbjct: 232 EMAEKDKQRYEAEMQ-----NYVPP 251
>sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 83.6 bits (205), Expect = 4e-16
Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
+++ K+P PKR SAFF FC EYRPK++ HP +G++AK+LG +W + DK+ YE
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 177 KKSEADKQRYEEQMSQFRA 233
KK+ K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164
Score = 46.6 bits (109), Expect = 6e-05
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 18 EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
+P +P+ S++ FF R + ++ HPD V +K+ W++ + KEK +E +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
+ADK RYE +M Y+PP
Sbjct: 65 KADKARYEREMK-----TYIPP 81
>sp|P09429|HMG1_HUMAN High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
sp|Q6YKA4|HMG1_CANFA High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 83.6 bits (205), Expect = 4e-16
Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
+++ K+P PKR SAFF FC EYRPK++ HP +G++AK+LG +W + DK+ YE
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 177 KKSEADKQRYEEQMSQFRA 233
KK+ K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164
Score = 46.6 bits (109), Expect = 6e-05
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 18 EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
+P +P+ S++ FF R + ++ HPD V +K+ W++ + KEK +E +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
+ADK RYE +M Y+PP
Sbjct: 65 KADKARYEREMK-----TYIPP 81
>sp|P63159|HMG1_RAT High mobility group protein 1 (HMG-1) (High mobility group protein
B1) (Amphoterin) (Heparin-binding protein p30)
sp|P63158|HMG1_MOUSE High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 83.6 bits (205), Expect = 4e-16
Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
+++ K+P PKR SAFF FC EYRPK++ HP +G++AK+LG +W + DK+ YE
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 177 KKSEADKQRYEEQMSQFRA 233
KK+ K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164
Score = 46.6 bits (109), Expect = 6e-05
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 18 EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
+P +P+ S++ FF R + ++ HPD V +K+ W++ + KEK +E +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
+ADK RYE +M Y+PP
Sbjct: 65 KADKARYEREMK-----TYIPP 81
>sp|P07156|HMG1_CRIGR High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 180
Score = 83.6 bits (205), Expect = 4e-16
Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
+++ K+P PKR SAFF FC EYRPK++ HP +G++AK+LG +W + DK+ YE
Sbjct: 51 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 110
Query: 177 KKSEADKQRYEEQMSQFRA 233
KK+ K++YE+ ++ +RA
Sbjct: 111 KKAAKLKEKYEKDIAAYRA 129
Score = 31.6 bits (70), Expect = 2.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 123 AKELGRLWESCTDKEK--YEKKSEADKQRYEEQMSQFRAGQYVPP 251
+K+ W++ + KEK +E ++ADK RYE +M Y+PP
Sbjct: 7 SKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK-----TYIPP 46
>sp|P12682|HMG1_PIG High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 82.8 bits (203), Expect = 7e-16
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
+++ K+P PKR SAFF FC EYRPK++ HP +G++AK+LG +W + DK YE
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYE 145
Query: 177 KKSEADKQRYEEQMSQFRA 233
KK+ K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164
Score = 46.6 bits (109), Expect = 6e-05
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 18 EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKKS 185
+P +P+ S++ FF R + ++ HPD V +K+ W++ + KEK +E +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
+ADK RYE +M Y+PP
Sbjct: 65 KADKARYEREMK-----TYIPP 81
>sp|Q9UGV6|HMG1X_HUMAN High mobility group protein 1-like 10 (HMG-1L10)
Length = 211
Score = 81.6 bits (200), Expect = 2e-15
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWE--SCTDKEKYE 176
+++ K+P PKR SAFF FC YRPK++ HP +G++AK+LG +W + DK+ YE
Sbjct: 86 KKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 177 KKSEADKQRYEEQMSQFRA 233
KK+ K++YE+ ++ +RA
Sbjct: 146 KKAAKLKEKYEKDIAAYRA 164
Score = 38.1 bits (87), Expect = 0.021
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = +3
Query: 24 GQPKRA---WSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWESCTDKEK--YEKK 182
G PK+ S+ FF R ++ HPD V +K+ W++ + KEK +E
Sbjct: 4 GDPKKLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDM 63
Query: 183 SEADKQRYEEQMSQFRAGQYVPP 251
++ADK YE +M Y+PP
Sbjct: 64 AKADKAHYEREMK-----TYIPP 81
>sp|P40644|HMGH_STRPU High mobility group protein 1 homolog
Length = 200
Score = 81.6 bits (200), Expect = 2e-15
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Frame = +3
Query: 3 RRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTDKEK--YE 176
RRR K+P PKR SAFF F E R ++ HP+W VG+IAKEL W + T EK ++
Sbjct: 91 RRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPNWSVGDIAKELAVRWRAMTAGEKIPFD 150
Query: 177 KKSEADKQRYEEQMSQFRAGQYVPPVKRPRADSNGSALIAGSSSTEDPTAVSTD 338
K + DK+RY + M++++A P+KR +S+ S+ + SS++D ++ +D
Sbjct: 151 KGAAKDKERYIKAMAEYKA--KAKPMKRQVKESSSSS--SSDSSSDDSSSDDSD 200
>sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2)
Length = 209
Score = 79.3 bits (194), Expect = 8e-15
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Frame = +3
Query: 15 KEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLW--ESCTDKEKYEKKSE 188
K+P PKR SAFF FC E+RPK++ HP +G+ AK+LG +W +S DK+ YE+K+
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
Query: 189 ADKQRYEEQMSQFRAGQYVPPVKRPRADSNGSALIAGSSSTEDP 320
K++YE+ ++ +RA + A G GS +P
Sbjct: 150 KLKEKYEKDIAAYRA------KGKSEAGKKGPGRPTGSKKKNEP 187
Score = 46.2 bits (108), Expect = 8e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 18 EPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVG--NIAKELGRLWE--SCTDKEKYEKKS 185
+P +P+ S++ FF R + ++ HPD V +K+ W+ S +K K+E +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 186 EADKQRYEEQMSQFRAGQYVPP 251
++DK RY+ +M YVPP
Sbjct: 65 KSDKARYDREMK-----NYVPP 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,747,093
Number of Sequences: 369166
Number of extensions: 1151847
Number of successful extensions: 4339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4289
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)