Planaria EST Database


DrC_00969

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00969
         (620 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q925B0|PAWR_MOUSE  PRKC apoptosis WT1 regulator protein (...    31   2.2  
sp|Q6L8H2|KRA53_HUMAN  Keratin-associated protein 5-3 (Kerat...    31   2.9  
sp|P14586|HRP3_PLAFS  Histidine-rich protein                       30   3.8  
sp|Q62627|PAWR_RAT  PRKC apoptosis WT1 regulator protein (Pr...    30   3.8  
sp|Q8FWU0|CATA_BRUSU  Catalase                                     30   4.9  
sp|Q9GKS9|CT012_MACFA  Protein C20orf12 homolog                    30   6.4  
sp|Q23985|DTX_DROME  Deltex protein                                29   8.4  
sp|Q9NVP4|CT012_HUMAN  Protein C20orf12                            29   8.4  
>sp|Q925B0|PAWR_MOUSE PRKC apoptosis WT1 regulator protein (Prostate apoptosis response-4
           protein) (Par-4)
          Length = 197

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 376 QQPYGKNNAITKHITIAKQPGVVVYRGTTVLPQPPQNLVPGK 251
           Q+   + +AIT+  TI  +   +   GT+ LPQ P   VPG+
Sbjct: 41  QKERKREDAITQQNTIQNEAATLPDPGTSYLPQDPSRTVPGR 82
>sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 (Keratin-associated protein 5.3)
           (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +3

Query: 270 CGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGCCLIPFCA----AGCQDVHRICPTCG 437
           CGGCGS+     +   GC     C+ +    P  CC +P C+      C     +C +CG
Sbjct: 14  CGGCGSSCGGCGSGYGGC-GSGCCVPVCCCKPV-CCCVPACSCSSCGSCGGSKGVCGSCG 71
>sp|P14586|HRP3_PLAFS Histidine-rich protein
          Length = 82

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +1

Query: 55  IRHRVMCHSHKYK*FNHNQYKCINHHHQYR*FNHNQYK*FNHHQYQYYNLRLLQAKIQPL 234
           + HR   + H++   NH+ Y     HH +R  +H      +HH++Q   L   + +I  +
Sbjct: 2   LNHRYHHYFHRHHHLNHHLYH---RHHHHRHHHHR-----HHHRHQI--LHQNRHQIHQI 51

Query: 235 *LEINLYQELNSVEVVAVLLFLDI 306
            L +N     N +   A+ LFL I
Sbjct: 52  LLSLN-----NKIMGYAIFLFLSI 70
>sp|Q62627|PAWR_RAT PRKC apoptosis WT1 regulator protein (Prostate apoptosis response-4
           protein) (Par-4) (Transcriptional repressor Par-4-like
           protein PAWR)
          Length = 332

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 376 QQPYGKNNAITKHITIAKQPGVVVYRGTTVLPQPPQNLVPGK 251
           Q+   + +AIT+  TI  +   +   GT+ LPQ P   VPG+
Sbjct: 176 QKERKREDAITQQNTIQNEAASLPDPGTSYLPQDPSRTVPGR 217
>sp|Q8FWU0|CATA_BRUSU Catalase
          Length = 499

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 19  LLQPR*FAYKKQIRHRVMCHSHKYK*FNHNQYKCINHHH 135
           +LQ R F+Y    RHR+  H   Y+    NQ KC+ HH+
Sbjct: 329 MLQARIFSYADAHRHRLGTH---YESIPVNQPKCLVHHY 364
>sp|Q9GKS9|CT012_MACFA Protein C20orf12 homolog
          Length = 606

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
 Frame = +3

Query: 216 SQNTTIVVGNQSLP------GTKFCGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGCC 377
           S   +I  G+++ P      GT  C  CG   +   +    C A+       L +P GC 
Sbjct: 163 SSQESICSGDKASPPPTQKGGTISCSRCGRWNLWEASFCGWCGAM-------LGIPAGCS 215

Query: 378 LIPFCAAGCQDVHRICPTCGRTLEVITK 461
           + P C A      R C +CG  ++ + K
Sbjct: 216 VCPKCGASNHLSARFCGSCGICVKSLVK 243
>sp|Q23985|DTX_DROME Deltex protein
          Length = 738

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 61  HRVMCHSHKYK*FNHNQYKCINHHHQYR*FNHNQYK*FNHHQYQYYNLRLLQAKIQP 231
           H+V    H+++   H Q +   HHHQ++   H Q +    HQ Q++ +    A  +P
Sbjct: 259 HQVQQQQHQHQ---HQQQQQQQHHHQHQQQQHQQQQ---QHQMQHHQIHHQTAPRKP 309
>sp|Q9NVP4|CT012_HUMAN Protein C20orf12
          Length = 579

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/74 (25%), Positives = 27/74 (36%)
 Frame = +3

Query: 240 GNQSLPGTKFCGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGCCLIPFCAAGCQDVHR 419
           G  +L    FCG CG+                      L +P GC + P C A      R
Sbjct: 170 GRWNLWEASFCGWCGAM---------------------LGIPAGCSVCPKCGASNHLSAR 208

Query: 420 ICPTCGRTLEVITK 461
            C +CG  ++ + K
Sbjct: 209 FCGSCGICVKSLVK 222
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,240,334
Number of Sequences: 369166
Number of extensions: 1058122
Number of successful extensions: 3059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2986
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00969

  1. Dr_sW_018_H09
  2. Dr_sW_024_H17