Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H09
(436 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q925B0|PAWR_MOUSE PRKC apoptosis WT1 regulator protein (... 31 1.00
sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 (Kerat... 31 1.3
sp|Q62627|PAWR_RAT PRKC apoptosis WT1 regulator protein (Pr... 30 1.7
sp|Q9GKS9|CT012_MACFA Protein C20orf12 homolog 30 2.9
sp|Q9NVP4|CT012_HUMAN Protein C20orf12 29 3.8
sp|Q9P2S6|ANKY1_HUMAN Ankyrin repeat and MYND domain protei... 29 5.0
sp|Q20318|LIN49_CAEEL Protein lin-49 (Abnormal cell lineage... 29 5.0
sp|Q6L8G9|KRA56_HUMAN Keratin-associated protein 5-6 (Kerat... 28 6.5
sp|Q8VEA6|CRDL2_MOUSE Chordin-like protein 2 precursor 28 6.5
sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2 28 8.4
>sp|Q925B0|PAWR_MOUSE PRKC apoptosis WT1 regulator protein (Prostate apoptosis response-4
protein) (Par-4)
Length = 197
Score = 31.2 bits (69), Expect = 1.00
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 240 QQPYGKNNAITKHITIAKQPGVVVYRGTTVLPQPPQNLVPGK 115
Q+ + +AIT+ TI + + GT+ LPQ P VPG+
Sbjct: 41 QKERKREDAITQQNTIQNEAATLPDPGTSYLPQDPSRTVPGR 82
>sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 (Keratin-associated protein 5.3)
(Ultrahigh sulfur keratin-associated protein 5.3)
(Keratin-associated protein 5-9) (Keratin-associated
protein 5.9) (UHS KerB-like)
Length = 238
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 134 CGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGCCLIPFCA----AGCQDVHRICPTCG 301
CGGCGS+ + GC C+ + P CC +P C+ C +C +CG
Sbjct: 14 CGGCGSSCGGCGSGYGGC-GSGCCVPVCCCKPV-CCCVPACSCSSCGSCGGSKGVCGSCG 71
>sp|Q62627|PAWR_RAT PRKC apoptosis WT1 regulator protein (Prostate apoptosis response-4
protein) (Par-4) (Transcriptional repressor Par-4-like
protein PAWR)
Length = 332
Score = 30.4 bits (67), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 240 QQPYGKNNAITKHITIAKQPGVVVYRGTTVLPQPPQNLVPGK 115
Q+ + +AIT+ TI + + GT+ LPQ P VPG+
Sbjct: 176 QKERKREDAITQQNTIQNEAASLPDPGTSYLPQDPSRTVPGR 217
>sp|Q9GKS9|CT012_MACFA Protein C20orf12 homolog
Length = 606
Score = 29.6 bits (65), Expect = 2.9
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Frame = +2
Query: 80 SQNTTIVVGNQSLP------GTKFCGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGCC 241
S +I G+++ P GT C CG + + C A+ L +P GC
Sbjct: 163 SSQESICSGDKASPPPTQKGGTISCSRCGRWNLWEASFCGWCGAM-------LGIPAGCS 215
Query: 242 LIPFCAAGCQDVHRICPTCGRTLEVITK 325
+ P C A R C +CG ++ + K
Sbjct: 216 VCPKCGASNHLSARFCGSCGICVKSLVK 243
>sp|Q9NVP4|CT012_HUMAN Protein C20orf12
Length = 579
Score = 29.3 bits (64), Expect = 3.8
Identities = 19/74 (25%), Positives = 27/74 (36%)
Frame = +2
Query: 104 GNQSLPGTKFCGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGCCLIPFCAAGCQDVHR 283
G +L FCG CG+ L +P GC + P C A R
Sbjct: 170 GRWNLWEASFCGWCGAM---------------------LGIPAGCSVCPKCGASNHLSAR 208
Query: 284 ICPTCGRTLEVITK 325
C +CG ++ + K
Sbjct: 209 FCGSCGICVKSLVK 222
>sp|Q9P2S6|ANKY1_HUMAN Ankyrin repeat and MYND domain protein 1 (Testis-specific
ankyrin-like protein 1) (Zinc-finger MYND domain protein
13)
Length = 941
Score = 28.9 bits (63), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 116 LPGTKFCGGCGSTVVPRYTTTPGCFAIVMC 205
+P KFC CG ++ R P C+ I+ C
Sbjct: 874 IPFFKFCYQCGRSIGVRLLPCPRCYGILTC 903
>sp|Q20318|LIN49_CAEEL Protein lin-49 (Abnormal cell lineage protein 49)
Length = 1042
Score = 28.9 bits (63), Expect = 5.0
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 176 TPGCFAIVMCLVIALFLPYGCCLIPFCAAGCQDVHR--ICPTCGRTLEVITKC*NGYYKR 349
T C IV C L + C IPF GC + R I P GR V+ G +K+
Sbjct: 206 TSNCNQIVYCDRCNLSVHQDCYGIPFIPEGCLECRRCGISP-AGRVNCVLCPSTTGAFKQ 264
Query: 350 ID*KLFI 370
+D K ++
Sbjct: 265 VDQKRWV 271
>sp|Q6L8G9|KRA56_HUMAN Keratin-associated protein 5-6 (Keratin-associated protein 5.6)
(Ultrahigh sulfur keratin-associated protein 5.6)
Length = 129
Score = 28.5 bits (62), Expect = 6.5
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Frame = +2
Query: 134 CGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGCCLIPFCA----AGCQDVHRICPTCG 301
CGGCGS+ C I C + CC +P C+ C C +CG
Sbjct: 21 CGGCGSSC---------CVPICCCKPV-------CCCVPACSCTSCGSCGGSKGCCGSCG 64
>sp|Q8VEA6|CRDL2_MOUSE Chordin-like protein 2 precursor
Length = 426
Score = 28.5 bits (62), Expect = 6.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +2
Query: 239 CLIPFCAAGCQDVHRI-CPT---CGRTLEVITKC 328
C++ C G QD HR+ CPT C + +V KC
Sbjct: 273 CILCTCIDGYQDCHRVTCPTQYPCSQPKKVAGKC 306
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2
Length = 501
Score = 28.1 bits (61), Expect = 8.4
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 134 CGGCGSTVVPRYTTTPGCFAIVMCLVIALFLPYGC 238
C GCG +PR T A C V+ F GC
Sbjct: 189 CDGCGKKKIpreTFQDHVRACSKCRVLCRFHTVGC 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,132,018
Number of Sequences: 369166
Number of extensions: 875116
Number of successful extensions: 2442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2442
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)