Planaria EST Database

DrC_00961

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00961
         (901 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DBB4|NARGL_MOUSE  NMDA receptor regulated 1-like protei...    33   1.4  
sp|Q13618|CUL3_HUMAN  Cullin-3 (CUL-3)                             32   1.9  
sp|Q9JLV5|CUL3_MOUSE  Cullin-3 (CUL-3)                             32   1.9  
sp|Q660R3|TIG_BORGA  Trigger factor (TF)                           32   1.9  
sp|O14261|TAF1_SCHPO  Taz1 interacting factor 1 (Protein taf1)     32   1.9  
sp|P50275|ASE1_YEAST  Anaphase spindle elongation protein          32   2.4  
sp|Q9PMS2|SELA_CAMJE  L-seryl-tRNA(Sec) selenium transferase...    32   2.4  
sp|Q57890|Y448_METJA  Hypothetical protein MJ0448                  31   4.1  
sp|Q9MUQ5|YCX1_MESVI  Hypothetical 26.1 kDa protein in ndhB-...    31   4.1  
sp|Q8EGR4|THII_SHEON  Thiamine biosynthesis protein thiI           31   4.1  

>sp|Q9DBB4|NARGL_MOUSE NMDA receptor regulated 1-like protein (NARG1-like protein)
          Length = 864

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +3

Query: 390 YSLIFHYADDYILAMKL---FIENFNLNINKMGYRDFQMWCIENQQLNSINLYKKIIQNC 560
           Y++ +H   DY  A+KL   F +   +  NK+ Y   ++   +NQ +   NL+++ +++ 
Sbjct: 154 YAIAYHLLKDYDTALKLLEEFRQTQQVPPNKIAYEYSELLLYQNQVMREANLFQESLEHI 213

Query: 561 KGKGRIRLIQKLKENFAVELHMSDRFKKNNGHWFRALV 674
           +   ++   + L E    E+ +     K     FR L+
Sbjct: 214 ETYEKLICDKLLVEEIKGEMLLKLGRLKEASEVFRNLI 251

>sp|Q13618|CUL3_HUMAN Cullin-3 (CUL-3)
          Length = 768

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +3

Query: 639 KKNNGHWFRAL------VLIHKNKRKLYSAFRSIKTSLMISRVPIYTLDEIKTNF--TIE 794
           K N+G  F  L      +++HK+  KLY+  R + T  +I++V    L+ +  NF  T+ 
Sbjct: 47  KNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLN 106

Query: 795 M*WTKNKNNYLKI 833
             W  ++   + I
Sbjct: 107 QAWNDHQTAMVMI 119

>sp|Q9JLV5|CUL3_MOUSE Cullin-3 (CUL-3)
          Length = 768

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +3

Query: 639 KKNNGHWFRAL------VLIHKNKRKLYSAFRSIKTSLMISRVPIYTLDEIKTNF--TIE 794
           K N+G  F  L      +++HK+  KLY+  R + T  +I++V    L+ +  NF  T+ 
Sbjct: 47  KNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLN 106

Query: 795 M*WTKNKNNYLKI 833
             W  ++   + I
Sbjct: 107 QAWNDHQTAMVMI 119

>sp|Q660R3|TIG_BORGA Trigger factor (TF)
          Length = 452

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 468 NKMGYRDFQMWCIENQQLNSINLYKKIIQNCKGKGRIRLIQKLKENFAVELHMSD 632
           NKMG  +F+     +  + S+NL  KI+ N K K    +IQK+ +   +E+  SD
Sbjct: 332 NKMGLEEFKSIFYSSGYVGSVNLKDKILSNLKSK---LIIQKMVDLDPIEVTESD 383

>sp|O14261|TAF1_SCHPO Taz1 interacting factor 1 (Protein taf1)
          Length = 926

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 186 LVSIK*FFLRFYKLHLRFDQFFYYHYQIVFHYKEMEF 76
           L+S+K F+L FYK+ LR+D  + Y  QI       +F
Sbjct: 314 LISLKSFWLSFYKVSLRYDALYEYLRQIAEELDRSKF 350

>sp|P50275|ASE1_YEAST Anaphase spindle elongation protein
          Length = 885

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
 Frame = +3

Query: 114 DSKKIDQISNEAYRIEEKIILLKP--------AKICDRQVKQNTSTKNCERSINQNTSKS 269
           D   ++   NE  R+EEK+ L KP          + + Q     S+K+  R +++N+ K 
Sbjct: 505 DELLLETCENELKRLEEKLTLYKPILKLISDFESLQEDQEFLERSSKDSSRLLSRNSHKI 564

Query: 270 L--EREMPNYLKPHIPKVYQE 326
           L  E +M   +  H P+V  +
Sbjct: 565 LLTEEKMRKRITRHFPRVIND 585

>sp|Q9PMS2|SELA_CAMJE L-seryl-tRNA(Sec) selenium transferase (Cysteinyl-tRNA(Sec)
           selenium transferase) (Selenocysteine synthase)
           (Selenocysteinyl-tRNA(Sec) synthase)
          Length = 440

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = +3

Query: 87  LCNEKQFDNDSKKIDQISNEAYRIEEKIILLKPAKICDRQVKQNTSTKNCERSINQNTSK 266
           LC +K+  +   ++ +I   ++R+ E +I     K+C+      T  K+ E++IN+NT+ 
Sbjct: 152 LCYDKEVISSRGELVEIGG-SFRVPE-VIKAAGVKLCEVGTSNKTHLKDYEQAINENTAL 209

Query: 267 SLEREMPNY 293
            L+    N+
Sbjct: 210 ILKTHKSNF 218

>sp|Q57890|Y448_METJA Hypothetical protein MJ0448
          Length = 256

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 366 FNEKDGYSYSLIFHYADDYILAMKLFIENFNLNINKMGYRD 488
           FNEK+G+ Y ++ H   D+   +K  IEN  +N   + ++D
Sbjct: 49  FNEKEGFDYIVLSHGHYDHCDGLKYVIENDLINGKVIAHKD 89

>sp|Q9MUQ5|YCX1_MESVI Hypothetical 26.1 kDa protein in ndhB-psaI intergenic region
          Length = 223

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 605 IFFQFLN*SYSTFTFAILYYFLIQINTVQLLVFYTPHLKIS 483
           +F  FL   +++   + L Y +IQIN VQL++F++ +L IS
Sbjct: 57  LFISFLGGRFASL-ISQLAYQIIQINIVQLIIFFSKNLHIS 96

>sp|Q8EGR4|THII_SHEON Thiamine biosynthesis protein thiI
          Length = 484

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 528 INLYKKIIQNCKGKGRIRLIQKLKENFAVELHMSDRFKKNNGHWFRALVLIHKNKRKLYS 707
           + LY +I+   K   R+R  + L+ N    L   D   K    W R +V++ KNK +L  
Sbjct: 5   VKLYPEIMMKSKPV-RMRFTKMLETNIRNVLKKVDDDAKVQRQWDRIMVMVPKNKPELAQ 63

Query: 708 AF 713
           AF
Sbjct: 64  AF 65

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,323,941
Number of Sequences: 369166
Number of extensions: 1537279
Number of successful extensions: 4624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4619
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00961

  1. Dr_sW_025_B05
  2. Dr_sW_024_E16