Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_E16
(901 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DBB4|NARGL_MOUSE NMDA receptor regulated 1-like protei... 33 1.4
sp|Q13618|CUL3_HUMAN Cullin-3 (CUL-3) 32 1.9
sp|Q9JLV5|CUL3_MOUSE Cullin-3 (CUL-3) 32 1.9
sp|Q660R3|TIG_BORGA Trigger factor (TF) 32 1.9
sp|O14261|TAF1_SCHPO Taz1 interacting factor 1 (Protein taf1) 32 1.9
sp|P50275|ASE1_YEAST Anaphase spindle elongation protein 32 2.4
sp|Q9PMS2|SELA_CAMJE L-seryl-tRNA(Sec) selenium transferase... 32 2.4
sp|Q57890|Y448_METJA Hypothetical protein MJ0448 31 4.1
sp|Q9MUQ5|YCX1_MESVI Hypothetical 26.1 kDa protein in ndhB-... 31 4.1
sp|Q8EGR4|THII_SHEON Thiamine biosynthesis protein thiI 31 4.1
>sp|Q9DBB4|NARGL_MOUSE NMDA receptor regulated 1-like protein (NARG1-like protein)
Length = 864
Score = 32.7 bits (73), Expect = 1.4
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +3
Query: 390 YSLIFHYADDYILAMKL---FIENFNLNINKMGYRDFQMWCIENQQLNSINLYKKIIQNC 560
Y++ +H DY A+KL F + + NK+ Y ++ +NQ + NL+++ +++
Sbjct: 154 YAIAYHLLKDYDTALKLLEEFRQTQQVPPNKIAYEYSELLLYQNQVMREANLFQESLEHI 213
Query: 561 KGKGRIRLIQKLKENFAVELHMSDRFKKNNGHWFRALV 674
+ ++ + L E E+ + K FR L+
Sbjct: 214 ETYEKLICDKLLVEEIKGEMLLKLGRLKEASEVFRNLI 251
>sp|Q13618|CUL3_HUMAN Cullin-3 (CUL-3)
Length = 768
Score = 32.3 bits (72), Expect = 1.9
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +3
Query: 639 KKNNGHWFRAL------VLIHKNKRKLYSAFRSIKTSLMISRVPIYTLDEIKTNF--TIE 794
K N+G F L +++HK+ KLY+ R + T +I++V L+ + NF T+
Sbjct: 47 KNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLN 106
Query: 795 M*WTKNKNNYLKI 833
W ++ + I
Sbjct: 107 QAWNDHQTAMVMI 119
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 (CUL-3)
Length = 768
Score = 32.3 bits (72), Expect = 1.9
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +3
Query: 639 KKNNGHWFRAL------VLIHKNKRKLYSAFRSIKTSLMISRVPIYTLDEIKTNF--TIE 794
K N+G F L +++HK+ KLY+ R + T +I++V L+ + NF T+
Sbjct: 47 KNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLN 106
Query: 795 M*WTKNKNNYLKI 833
W ++ + I
Sbjct: 107 QAWNDHQTAMVMI 119
>sp|Q660R3|TIG_BORGA Trigger factor (TF)
Length = 452
Score = 32.3 bits (72), Expect = 1.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 468 NKMGYRDFQMWCIENQQLNSINLYKKIIQNCKGKGRIRLIQKLKENFAVELHMSD 632
NKMG +F+ + + S+NL KI+ N K K +IQK+ + +E+ SD
Sbjct: 332 NKMGLEEFKSIFYSSGYVGSVNLKDKILSNLKSK---LIIQKMVDLDPIEVTESD 383
>sp|O14261|TAF1_SCHPO Taz1 interacting factor 1 (Protein taf1)
Length = 926
Score = 32.3 bits (72), Expect = 1.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 186 LVSIK*FFLRFYKLHLRFDQFFYYHYQIVFHYKEMEF 76
L+S+K F+L FYK+ LR+D + Y QI +F
Sbjct: 314 LISLKSFWLSFYKVSLRYDALYEYLRQIAEELDRSKF 350
>sp|P50275|ASE1_YEAST Anaphase spindle elongation protein
Length = 885
Score = 32.0 bits (71), Expect = 2.4
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Frame = +3
Query: 114 DSKKIDQISNEAYRIEEKIILLKP--------AKICDRQVKQNTSTKNCERSINQNTSKS 269
D ++ NE R+EEK+ L KP + + Q S+K+ R +++N+ K
Sbjct: 505 DELLLETCENELKRLEEKLTLYKPILKLISDFESLQEDQEFLERSSKDSSRLLSRNSHKI 564
Query: 270 L--EREMPNYLKPHIPKVYQE 326
L E +M + H P+V +
Sbjct: 565 LLTEEKMRKRITRHFPRVIND 585
>sp|Q9PMS2|SELA_CAMJE L-seryl-tRNA(Sec) selenium transferase (Cysteinyl-tRNA(Sec)
selenium transferase) (Selenocysteine synthase)
(Selenocysteinyl-tRNA(Sec) synthase)
Length = 440
Score = 32.0 bits (71), Expect = 2.4
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +3
Query: 87 LCNEKQFDNDSKKIDQISNEAYRIEEKIILLKPAKICDRQVKQNTSTKNCERSINQNTSK 266
LC +K+ + ++ +I ++R+ E +I K+C+ T K+ E++IN+NT+
Sbjct: 152 LCYDKEVISSRGELVEIGG-SFRVPE-VIKAAGVKLCEVGTSNKTHLKDYEQAINENTAL 209
Query: 267 SLEREMPNY 293
L+ N+
Sbjct: 210 ILKTHKSNF 218
>sp|Q57890|Y448_METJA Hypothetical protein MJ0448
Length = 256
Score = 31.2 bits (69), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 366 FNEKDGYSYSLIFHYADDYILAMKLFIENFNLNINKMGYRD 488
FNEK+G+ Y ++ H D+ +K IEN +N + ++D
Sbjct: 49 FNEKEGFDYIVLSHGHYDHCDGLKYVIENDLINGKVIAHKD 89
>sp|Q9MUQ5|YCX1_MESVI Hypothetical 26.1 kDa protein in ndhB-psaI intergenic region
Length = 223
Score = 31.2 bits (69), Expect = 4.1
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 605 IFFQFLN*SYSTFTFAILYYFLIQINTVQLLVFYTPHLKIS 483
+F FL +++ + L Y +IQIN VQL++F++ +L IS
Sbjct: 57 LFISFLGGRFASL-ISQLAYQIIQINIVQLIIFFSKNLHIS 96
>sp|Q8EGR4|THII_SHEON Thiamine biosynthesis protein thiI
Length = 484
Score = 31.2 bits (69), Expect = 4.1
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 528 INLYKKIIQNCKGKGRIRLIQKLKENFAVELHMSDRFKKNNGHWFRALVLIHKNKRKLYS 707
+ LY +I+ K R+R + L+ N L D K W R +V++ KNK +L
Sbjct: 5 VKLYPEIMMKSKPV-RMRFTKMLETNIRNVLKKVDDDAKVQRQWDRIMVMVPKNKPELAQ 63
Query: 708 AF 713
AF
Sbjct: 64 AF 65
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,323,941
Number of Sequences: 369166
Number of extensions: 1537279
Number of successful extensions: 4624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4619
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)