Planaria EST Database

DrC_00934

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00934
         (1265 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q76MH8|MATK_ZINOF  Maturase K (Intron maturase)                 32   3.0  
sp|Q89420|VE2_COPV  Regulatory protein E2                          31   6.6  

>sp|Q76MH8|MATK_ZINOF Maturase K (Intron maturase)
          Length = 515

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = -2

Query: 1108 NIGIYNYFC*NSE*IMK-------LEEKLAIIGIRQFEYIVRKWRIHEINYNRFLWRMFI 950
            ++G+Y  FC  +  I K         +  +I+G R   ++++KW+ H +N+ ++ +  + 
Sbjct: 259  HLGVYRIFCQKTLWIFKDPFIHYIRYQGKSILGSRGTHFLMKKWKYHLVNFWQYYFHFWS 318

Query: 949  TILSIPFKFISPFPAFYGNFDFFF 878
                I  K +S       N+ F+F
Sbjct: 319  QPYRIDIKKLS-------NYSFYF 335

>sp|Q89420|VE2_COPV Regulatory protein E2
          Length = 385

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +2

Query: 617 LFYGNEFDSDEICRGNVLDNPHKY---SQQILFYD-EVDKTKYNEAGNFRFRDQPS 772
           ++Y +EFD+ E   G +      Y   +QQ+ + D E +  KY+E G +   +QP+
Sbjct: 137 IYYQDEFDTWEKAHGKLDHKGLSYMHGTQQVYYVDFEEEANKYSETGKYEILNQPT 192

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,103,086
Number of Sequences: 369166
Number of extensions: 3102952
Number of successful extensions: 7640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7639
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14623816900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00934

  1. Dr_sW_023_J09
  2. Dr_sW_004_A17
  3. Dr_sW_026_M19