Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_M19
(833 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q76MH8|MATK_ZINOF Maturase K (Intron maturase) 32 1.7
sp|Q89420|VE2_COPV Regulatory protein E2 31 3.7
sp|P57521|NADD_BUCAI Probable nicotinate-nucleotide adenyly... 30 8.2
sp|Q47860|HYIN_PANAY Indoleacetamide hydrolase (IAH) (Indol... 30 8.2
>sp|Q76MH8|MATK_ZINOF Maturase K (Intron maturase)
Length = 515
Score = 32.3 bits (72), Expect = 1.7
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = -1
Query: 680 NIGIYNYFC*NSE*IMK-------LEEKLAIIGIRQFEYIVRKWRIHEINYNRFLWRMFI 522
++G+Y FC + I K + +I+G R ++++KW+ H +N+ ++ + +
Sbjct: 259 HLGVYRIFCQKTLWIFKDPFIHYIRYQGKSILGSRGTHFLMKKWKYHLVNFWQYYFHFWS 318
Query: 521 TILSIPFKFISPFPAFYGNFDFFF 450
I K +S N+ F+F
Sbjct: 319 QPYRIDIKKLS-------NYSFYF 335
>sp|Q89420|VE2_COPV Regulatory protein E2
Length = 385
Score = 31.2 bits (69), Expect = 3.7
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 189 LFYGNEFDSDEICRGNVLDNPHKY---SQQILFYD-EVDKTKYNEAGNFRFRDQPS 344
++Y +EFD+ E G + Y +QQ+ + D E + KY+E G + +QP+
Sbjct: 137 IYYQDEFDTWEKAHGKLDHKGLSYMHGTQQVYYVDFEEEANKYSETGKYEILNQPT 192
>sp|P57521|NADD_BUCAI Probable nicotinate-nucleotide adenylyltransferase (Deamido-NAD(+)
pyrophosphorylase) (Deamido-NAD(+) diphosphorylase)
(Nicotinate mononucleotide adenylyltransferase) (NaMN
adenylyltransferase)
Length = 214
Score = 30.0 bits (66), Expect = 8.2
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 3 ECNIQLNSPVGELRYSHYECIIDAKLLQGWPNSLKFLRCYQFCKMNHSLTYQSAEMEILQ 182
+CN+ P G + +SH CI +S + + Y + K +HSL IL
Sbjct: 155 DCNLLHKQPCGLIFFSHAPCIN--------ISSSRIRKNYFYGKNSHSLLPSIVNNYILL 206
Query: 183 KWLFYGNE 206
K L+Y N+
Sbjct: 207 KKLYYTNQ 214
>sp|Q47860|HYIN_PANAY Indoleacetamide hydrolase (IAH) (Indole-3-acetamide hydrolase)
Length = 460
Score = 30.0 bits (66), Expect = 8.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 354 PLSHTEDASYQLSTIHKEHDFLVYLVAVSQNGEEEIEV 467
P+SHT+DA L+ K+ FL L++ S GE EV
Sbjct: 196 PVSHTKDAPGLLTRTVKDAAFLYGLISGSNTGEPSCEV 233
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,110,111
Number of Sequences: 369166
Number of extensions: 2172160
Number of successful extensions: 5472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5471
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)