Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_00901
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
***** No hits found ******
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,066,856
Number of Sequences: 369166
Number of extensions: 315914
Number of successful extensions: 612
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
- Dr_sW_019_O14
- Dr_sW_024_A05
- Dr_sW_005_D10
- Dr_sW_022_D09
- Dr_sW_005_K08
- Dr_sW_012_J11
- Dr_sW_003_H04
- Dr_sW_005_P09
- Dr_sW_012_M17
- Dr_sW_017_I18
- Dr_sW_017_J17
- Dr_sW_018_C11
- Dr_sW_008_G15
- Dr_sW_025_O03
- Dr_sW_002_H12
- Dr_sW_023_E05
- Dr_sW_022_L05