Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_P09
(496 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08492|HEMA_PI3H4 Hemagglutinin-neuraminidase 29 5.3
sp|Q9DHR2|MP44_YLDV Probable metalloendopeptidase G1-type 29 5.3
>sp|P08492|HEMA_PI3H4 Hemagglutinin-neuraminidase
Length = 572
Score = 29.3 bits (64), Expect = 5.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 138 TSTKPTGHIVSTQNTISTNYTTMSSIT---TRFCLHIVTRN 25
TST+ + T+S YTT S IT +C HIV N
Sbjct: 511 TSTERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEIN 551
>sp|Q9DHR2|MP44_YLDV Probable metalloendopeptidase G1-type
Length = 590
Score = 29.3 bits (64), Expect = 5.3
Identities = 16/67 (23%), Positives = 35/67 (52%)
Frame = -2
Query: 204 SFSCTN*IIKNSTSNRSIN*NCTSTKPTGHIVSTQNTISTNYTTMSSITTRFCLHIVTRN 25
SF + + ST+ + ++ C S K + + + NT+ + + + + FCL+ + +
Sbjct: 49 SFDSSKFVANASTARKYMSFWCCSIKGKSNYIDSINTLISWFFNNNKLRDNFCLNDIKNH 108
Query: 24 IDKQIEN 4
I K++EN
Sbjct: 109 I-KELEN 114
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,447,419
Number of Sequences: 369166
Number of extensions: 239011
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)