DrC_00898
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00898 (804 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine rec... 42 0.002 sp|Q623U2|PTDSR_CAEBR Protein psr-1 37 0.063 sp|Q6NYC1|PTDSR_HUMAN Protein PTDSR (Phosphatidylserine rec... 37 0.082 sp|Q5ZMK5|PTDSR_CHICK Protein PTDSR 37 0.082 sp|Q9ERI5|PTDSR_MOUSE Protein PTDSR (Phosphatidylserine rec... 37 0.082 sp|Q6AYK2|PTDSR_RAT Protein PTDSR 37 0.082 sp|P87416|CYB_ELASE Cytochrome b 36 0.14 sp|Q7ZX37|PTSR2_XENLA Protein PTDSR2 34 0.53 sp|Q9MLK4|CYB_PSEAU Cytochrome b 33 0.91 sp|Q9VD28|PTDSR_DROME Protein PSR 33 1.2
>sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine receptor 1) Length = 400 Score = 42.4 bits (98), Expect = 0.002 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 7/178 (3%) Frame = +2 Query: 26 PIIVKDATINWTAQNLFSFDFFQTIYTYALMSKTNKFSNISNLFSRNSLTSDEKMRILLD 205 P+I+ T NW A++ ++ + +S + + E D Sbjct: 74 PVIITGLTDNWAAKDKWTVE------------------RLSKKYRNQNFKCGED-----D 110 Query: 206 NSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPWYVGWSNCDPLVSKILRQHYSTP 385 N N + ++++ DY +NN + S + S + +K L + YS P Sbjct: 111 NGNSVRMKMKYYH---DYM---------LNNKDDSPLYIFDSSFAERRKTKKLSEDYSVP 158 Query: 386 YFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 538 F ++ + D W MG G +HID + +W + L+G K W L PP Sbjct: 159 KFFEDDLFHYADDKKRPPHRWFVMGPARSGTAIHIDPLGTSAWNSLLQGHKRWVLIPP 216
>sp|Q623U2|PTDSR_CAEBR Protein psr-1 Length = 397 Score = 37.0 bits (84), Expect = 0.063 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%) Frame = +2 Query: 290 VNNFNTSIPWYVGWSNCDPLVSKILRQHYSTPYFLPENSESHNSD--------WIFMGHP 445 +NN + S + S + +K L + Y P F E+ H +D W MG Sbjct: 127 LNNRDDSPLYIFDSSFAERRKTKKLSEDYKVPKFF-EDDLFHYADHKKRPPHRWFVMGPA 185 Query: 446 GYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 538 G +HID + +W + L G K W L PP Sbjct: 186 RSGTAIHIDPLGTSAWNSLLLGYKRWVLIPP 216
>sp|Q6NYC1|PTDSR_HUMAN Protein PTDSR (Phosphatidylserine receptor) sp|Q5R6G2|PTDSR_PONPY Protein PTDSR Length = 403 Score = 36.6 bits (83), Expect = 0.082 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Frame = +2 Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520 L + Y P F ++ + + W MG P G +HID + +W A ++G K Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205 Query: 521 WKLKP---PQECI 550 W L P P+E I Sbjct: 206 WCLFPTSTpreLI 218
>sp|Q5ZMK5|PTDSR_CHICK Protein PTDSR Length = 414 Score = 36.6 bits (83), Expect = 0.082 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Frame = +2 Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520 L + Y P F ++ + + W MG P G +HID + +W A ++G K Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205 Query: 521 WKLKP---PQECI 550 W L P P+E I Sbjct: 206 WCLFPTSTpreLI 218
>sp|Q9ERI5|PTDSR_MOUSE Protein PTDSR (Phosphatidylserine receptor) (Apoptotic cell clearance receptor PtdSerR) Length = 403 Score = 36.6 bits (83), Expect = 0.082 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Frame = +2 Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520 L + Y P F ++ + + W MG P G +HID + +W A ++G K Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205 Query: 521 WKLKP---PQECI 550 W L P P+E I Sbjct: 206 WCLFPTNTpreLI 218
>sp|Q6AYK2|PTDSR_RAT Protein PTDSR Length = 403 Score = 36.6 bits (83), Expect = 0.082 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Frame = +2 Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520 L + Y P F ++ + + W MG P G +HID + +W A ++G K Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205 Query: 521 WKLKP---PQECI 550 W L P P+E I Sbjct: 206 WCLFPTNTpreLI 218
>sp|P87416|CYB_ELASE Cytochrome b Length = 214 Score = 35.8 bits (81), Expect = 0.14 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 20/155 (12%) Frame = +2 Query: 11 AYSGKPIIVKDATINWTAQNLFSFD---FFQTIYTY--------ALMSKTNKFSNISNLF 157 A+S I +D WT QNL + FF IY + M+K S ++ LF Sbjct: 60 AFSSVVHITRDVPYGWTMQNLHAISASLFFICIYIHIARGLYYGLYMNKEVWLSGVTLLF 119 Query: 158 SRNSLTSDEKMRILLDNSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPW------ 319 + + FF Y + + + A + N T+IP+ Sbjct: 120 --------------------TLMATAFFGYVLPWGQMSFWAATVITNLLTAIPYLGTMLT 159 Query: 320 ---YVGWSNCDPLVSKILRQHYSTPYFLPENSESH 415 + G+S DP +++ H+ P+ + S +H Sbjct: 160 TWLWGGFSXNDPTLTRFFALHFILPFIIISLSSAH 194
>sp|Q7ZX37|PTSR2_XENLA Protein PTDSR2 Length = 403 Score = 33.9 bits (76), Expect = 0.53 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = +2 Query: 425 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 550 W MG P G +HID + +W + + G K W L P P+E I Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNSLVHGHKRWCLFPTNTpreLI 218
>sp|Q9MLK4|CYB_PSEAU Cytochrome b Length = 372 Score = 33.1 bits (74), Expect = 0.91 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 12/147 (8%) Frame = +2 Query: 11 AYSGKPIIVKDATINWTAQNLFSFD---FFQTIYTYALMSKTNKFSNISNLFSRNSLTSD 181 A+S IV+D W QN+ + FF IYT+ + ++ S Sbjct: 54 AFSSVTHIVRDVPYGWIMQNMHAIGASMFFICIYTHIA-----RGLYYGLYLNKEVWLSG 108 Query: 182 EKMRILLDNSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPW---------YVGWS 334 + I+L + FF Y + + + A + N T+IP+ + G+S Sbjct: 109 TALLIVL-------MATAFFGYVLPWGQMSFWAATVITNLLTAIPYMGPKLTTWFWGGFS 161 Query: 335 NCDPLVSKILRQHYSTPYFLPENSESH 415 DP +++ H+ P+ + S H Sbjct: 162 INDPTLTRFFALHFILPFLIISLSSIH 188
>sp|Q9VD28|PTDSR_DROME Protein PSR Length = 408 Score = 32.7 bits (73), Expect = 1.2 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +2 Query: 425 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPPQ 541 W MG G +HID + +W ++G K W L P Q Sbjct: 179 WFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQ 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,484,689
Number of Sequences: 369166
Number of extensions: 1752284
Number of successful extensions: 4166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4165
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
