Planaria EST Database


DrC_00898

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00898
         (804 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9GYI4|PTDSR_CAEEL  Protein psr-1 (Phosphatidylserine rec...    42   0.002
sp|Q623U2|PTDSR_CAEBR  Protein psr-1                               37   0.063
sp|Q6NYC1|PTDSR_HUMAN  Protein PTDSR (Phosphatidylserine rec...    37   0.082
sp|Q5ZMK5|PTDSR_CHICK  Protein PTDSR                               37   0.082
sp|Q9ERI5|PTDSR_MOUSE  Protein PTDSR (Phosphatidylserine rec...    37   0.082
sp|Q6AYK2|PTDSR_RAT  Protein PTDSR                                 37   0.082
sp|P87416|CYB_ELASE  Cytochrome b                                  36   0.14 
sp|Q7ZX37|PTSR2_XENLA  Protein PTDSR2                              34   0.53 
sp|Q9MLK4|CYB_PSEAU  Cytochrome b                                  33   0.91 
sp|Q9VD28|PTDSR_DROME  Protein PSR                                 33   1.2  
>sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine receptor 1)
          Length = 400

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 7/178 (3%)
 Frame = +2

Query: 26  PIIVKDATINWTAQNLFSFDFFQTIYTYALMSKTNKFSNISNLFSRNSLTSDEKMRILLD 205
           P+I+   T NW A++ ++ +                   +S  +   +    E      D
Sbjct: 74  PVIITGLTDNWAAKDKWTVE------------------RLSKKYRNQNFKCGED-----D 110

Query: 206 NSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPWYVGWSNCDPLVSKILRQHYSTP 385
           N N   +  ++++   DY          +NN + S  +    S  +   +K L + YS P
Sbjct: 111 NGNSVRMKMKYYH---DYM---------LNNKDDSPLYIFDSSFAERRKTKKLSEDYSVP 158

Query: 386 YFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 538
            F  ++   +  D       W  MG    G  +HID +   +W + L+G K W L PP
Sbjct: 159 KFFEDDLFHYADDKKRPPHRWFVMGPARSGTAIHIDPLGTSAWNSLLQGHKRWVLIPP 216
>sp|Q623U2|PTDSR_CAEBR Protein psr-1
          Length = 397

 Score = 37.0 bits (84), Expect = 0.063
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
 Frame = +2

Query: 290 VNNFNTSIPWYVGWSNCDPLVSKILRQHYSTPYFLPENSESHNSD--------WIFMGHP 445
           +NN + S  +    S  +   +K L + Y  P F  E+   H +D        W  MG  
Sbjct: 127 LNNRDDSPLYIFDSSFAERRKTKKLSEDYKVPKFF-EDDLFHYADHKKRPPHRWFVMGPA 185

Query: 446 GYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 538
             G  +HID +   +W + L G K W L PP
Sbjct: 186 RSGTAIHIDPLGTSAWNSLLLGYKRWVLIPP 216
>sp|Q6NYC1|PTDSR_HUMAN Protein PTDSR (Phosphatidylserine receptor)
 sp|Q5R6G2|PTDSR_PONPY Protein PTDSR
          Length = 403

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = +2

Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
           L + Y  P F  ++   +  +       W  MG P  G  +HID +   +W A ++G K 
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205

Query: 521 WKLKP---PQECI 550
           W L P   P+E I
Sbjct: 206 WCLFPTSTpreLI 218
>sp|Q5ZMK5|PTDSR_CHICK Protein PTDSR
          Length = 414

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = +2

Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
           L + Y  P F  ++   +  +       W  MG P  G  +HID +   +W A ++G K 
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205

Query: 521 WKLKP---PQECI 550
           W L P   P+E I
Sbjct: 206 WCLFPTSTpreLI 218
>sp|Q9ERI5|PTDSR_MOUSE Protein PTDSR (Phosphatidylserine receptor) (Apoptotic cell
           clearance receptor PtdSerR)
          Length = 403

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = +2

Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
           L + Y  P F  ++   +  +       W  MG P  G  +HID +   +W A ++G K 
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205

Query: 521 WKLKP---PQECI 550
           W L P   P+E I
Sbjct: 206 WCLFPTNTpreLI 218
>sp|Q6AYK2|PTDSR_RAT Protein PTDSR
          Length = 403

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = +2

Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
           L + Y  P F  ++   +  +       W  MG P  G  +HID +   +W A ++G K 
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205

Query: 521 WKLKP---PQECI 550
           W L P   P+E I
Sbjct: 206 WCLFPTNTpreLI 218
>sp|P87416|CYB_ELASE Cytochrome b
          Length = 214

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 20/155 (12%)
 Frame = +2

Query: 11  AYSGKPIIVKDATINWTAQNLFSFD---FFQTIYTY--------ALMSKTNKFSNISNLF 157
           A+S    I +D    WT QNL +     FF  IY +          M+K    S ++ LF
Sbjct: 60  AFSSVVHITRDVPYGWTMQNLHAISASLFFICIYIHIARGLYYGLYMNKEVWLSGVTLLF 119

Query: 158 SRNSLTSDEKMRILLDNSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPW------ 319
                               + +   FF Y   +  +  + A  + N  T+IP+      
Sbjct: 120 --------------------TLMATAFFGYVLPWGQMSFWAATVITNLLTAIPYLGTMLT 159

Query: 320 ---YVGWSNCDPLVSKILRQHYSTPYFLPENSESH 415
              + G+S  DP +++    H+  P+ +   S +H
Sbjct: 160 TWLWGGFSXNDPTLTRFFALHFILPFIIISLSSAH 194
>sp|Q7ZX37|PTSR2_XENLA Protein PTDSR2
          Length = 403

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 425 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 550
           W  MG P  G  +HID +   +W + + G K W L P   P+E I
Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNSLVHGHKRWCLFPTNTpreLI 218
>sp|Q9MLK4|CYB_PSEAU Cytochrome b
          Length = 372

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
 Frame = +2

Query: 11  AYSGKPIIVKDATINWTAQNLFSFD---FFQTIYTYALMSKTNKFSNISNLFSRNSLTSD 181
           A+S    IV+D    W  QN+ +     FF  IYT+       +        ++    S 
Sbjct: 54  AFSSVTHIVRDVPYGWIMQNMHAIGASMFFICIYTHIA-----RGLYYGLYLNKEVWLSG 108

Query: 182 EKMRILLDNSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPW---------YVGWS 334
             + I+L       +   FF Y   +  +  + A  + N  T+IP+         + G+S
Sbjct: 109 TALLIVL-------MATAFFGYVLPWGQMSFWAATVITNLLTAIPYMGPKLTTWFWGGFS 161

Query: 335 NCDPLVSKILRQHYSTPYFLPENSESH 415
             DP +++    H+  P+ +   S  H
Sbjct: 162 INDPTLTRFFALHFILPFLIISLSSIH 188
>sp|Q9VD28|PTDSR_DROME Protein PSR
          Length = 408

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 425 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPPQ 541
           W  MG    G  +HID +   +W   ++G K W L P Q
Sbjct: 179 WFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQ 217
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,484,689
Number of Sequences: 369166
Number of extensions: 1752284
Number of successful extensions: 4166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4165
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00898

  1. Dr_sW_022_J22
  2. Dr_sW_013_E14