Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E14
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6NYC1|PTDSR_HUMAN Protein PTDSR (Phosphatidylserine rec... 36 0.033
sp|Q5ZMK5|PTDSR_CHICK Protein PTDSR 36 0.033
sp|Q9ERI5|PTDSR_MOUSE Protein PTDSR (Phosphatidylserine rec... 36 0.033
sp|Q6AYK2|PTDSR_RAT Protein PTDSR 36 0.033
sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine rec... 35 0.044
sp|Q9NWT6|HIF1N_HUMAN Hypoxia-inducible factor 1 alpha inhi... 34 0.13
sp|Q7ZX37|PTSR2_XENLA Protein PTDSR2 34 0.13
sp|Q623U2|PTDSR_CAEBR Protein psr-1 33 0.17
sp|Q9VD28|PTDSR_DROME Protein PSR 33 0.28
sp|Q6PFM0|PTDSR_BRARE Protein PTDSR (Phosphatidylserine rec... 33 0.28
>sp|Q6NYC1|PTDSR_HUMAN Protein PTDSR (Phosphatidylserine receptor)
sp|Q5R6G2|PTDSR_PONPY Protein PTDSR
Length = 403
Score = 35.8 bits (81), Expect = 0.033
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 151
W MG P G +HID + +W A ++G K W L P P+E I
Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTpreLI 218
>sp|Q5ZMK5|PTDSR_CHICK Protein PTDSR
Length = 414
Score = 35.8 bits (81), Expect = 0.033
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 151
W MG P G +HID + +W A ++G K W L P P+E I
Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTpreLI 218
>sp|Q9ERI5|PTDSR_MOUSE Protein PTDSR (Phosphatidylserine receptor) (Apoptotic cell
clearance receptor PtdSerR)
Length = 403
Score = 35.8 bits (81), Expect = 0.033
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 151
W MG P G +HID + +W A ++G K W L P P+E I
Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTNTpreLI 218
>sp|Q6AYK2|PTDSR_RAT Protein PTDSR
Length = 403
Score = 35.8 bits (81), Expect = 0.033
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 151
W MG P G +HID + +W A ++G K W L P P+E I
Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTNTpreLI 218
>sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine receptor 1)
Length = 400
Score = 35.4 bits (80), Expect = 0.044
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 139
W MG G +HID + +W + L+G K W L PP
Sbjct: 179 WFVMGPARSGTAIHIDPLGTSAWNSLLQGHKRWVLIPP 216
>sp|Q9NWT6|HIF1N_HUMAN Hypoxia-inducible factor 1 alpha inhibitor (Hypoxia-inducible
factor asparagine hydroxylase) (Factor inhibiting HIF-1)
(FIH-1)
Length = 349
Score = 33.9 bits (76), Expect = 0.13
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 29/112 (25%)
Frame = +2
Query: 20 SDWIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPPQ--ECIFSCPGN-------- 169
S+ + +G G H D E ++ AQ+KG K L PP EC++ P +
Sbjct: 184 SNLLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQ 241
Query: 170 -------------------LEVVVEPGDIIVLDTNLWYHQTEIIGDDISVTI 268
E VV PGD++ + W+H ++ I++T+
Sbjct: 242 VDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITV 293
>sp|Q7ZX37|PTSR2_XENLA Protein PTDSR2
Length = 403
Score = 33.9 bits (76), Expect = 0.13
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 151
W MG P G +HID + +W + + G K W L P P+E I
Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNSLVHGHKRWCLFPTNTpreLI 218
>sp|Q623U2|PTDSR_CAEBR Protein psr-1
Length = 397
Score = 33.5 bits (75), Expect = 0.17
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 139
W MG G +HID + +W + L G K W L PP
Sbjct: 179 WFVMGPARSGTAIHIDPLGTSAWNSLLLGYKRWVLIPP 216
>sp|Q9VD28|PTDSR_DROME Protein PSR
Length = 408
Score = 32.7 bits (73), Expect = 0.28
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPPQ 142
W MG G +HID + +W ++G K W L P Q
Sbjct: 179 WFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQ 217
>sp|Q6PFM0|PTDSR_BRARE Protein PTDSR (Phosphatidylserine receptor) (zfpsr)
Length = 403
Score = 32.7 bits (73), Expect = 0.28
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 26 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 151
W MG G +HID + +W A ++G K W L P P+E I
Sbjct: 174 WFVMGPARSGTGIHIDPLGTSAWNALVQGHKRWCLFPTHTpreLI 218
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,666,175
Number of Sequences: 369166
Number of extensions: 889273
Number of successful extensions: 2112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2112
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)