Planarian EST Database

DrC_00894

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00894 TTCTACACCATTTTATTTAAATAATAGTATTTAAACATGACTGATTATGATGTTAAAGAA TCAAAAGTTACGGGTCACGTTAAATGGTTTAATACCAAATCTGGTTATGGGTTTATCAAG AAAGACTCTGATGGTGCAGATGTATTTGTCCATCATTCTTCAATATCTGCCAGCAATTCA AATTCATTGGCTGATGGAGAAGAAGTGTTATTTGATGTAATTGAAGGTTCCAAAGGTCTT GAGGCAAGAAATGTGTCTGGTCCAGATGGTGGCGATGTAATTGGTGGAAAACCTTTCCAG CAAAATGACAATAGGTCCAATATGAGAAGAGGTGGTCCTAGAAACGATTTTAGAAATCAG CCATATTCTAGAAATGGTGGTGGGGGTGGTCAACCACGAAGAGATTATAATGACAGACAA GGAGGAGATATTCAATTCGGTAGATATGAAAATAATGATGGTGATAGACGACGACAACAG GGTCAAGGATATAATAATCGTGGTTATGGAAACCCTAAAGGTGGGCAATCATATGGTCAA AGAGATATGGGTTCAAGTAGAGGAGGACAACGTCATGGTGGCAGAGGAAATTACTCTGGT GGTTATGATAACAGAAATAAAGGACACGGAGGTGGAGACAGTTATGAATAATAATATTTG CTTTGTCGGTATTACATTCTAATGCATTTTTACTAAGAAGCAGTGCCGAGCAATTAACAA ATACGATGTACCTGTTTTAAATAATTAAAATTTATAAATGT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00894
         (761 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41824|YBOXH_APLCA  Y-box factor homolog (APY1)                 99   2e-20
sp|P62960|YBOX1_MOUSE  Nuclease sensitive element binding pr...    87   6e-17
sp|P67809|YBOX1_HUMAN  Nuclease sensitive element binding pr...    87   6e-17
sp|Q06066|YBOX1_CHICK  Nuclease sensitive element binding pr...    87   6e-17
sp|P21573|YBOX1_XENLA  Nuclease sensitive element binding pr...    85   2e-16
sp|Q00436|YB3_XENLA  B box binding protein (YB3 protein)           82   1e-15
sp|P21574|YBX2A_XENLA  Y-box binding protein 2-A (Cytoplasmi...    82   2e-15
sp|Q9JKB3|DBPA_MOUSE  DNA-binding protein A (Cold shock doma...    80   8e-15
sp|P45441|YBX2B_XENLA  Y-box binding protein 2-B (Cytoplasmi...    80   8e-15
sp|P16989|DBPA_HUMAN  DNA-binding protein A (Cold shock doma...    80   8e-15

>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
          Length = 253

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 57/122 (46%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
 Frame = +1

Query: 61  SKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGEEVLFDVIEG 228
           S+V+G VKWFN KSGYGFI +D    DVFVH               + DGE+V FDV+EG
Sbjct: 31  SQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEG 90

Query: 229 SKGLEARNVSGPDGGDVIGGKPFQQNDNRSNMRRGGPRNDFRNQPYSRNGGGGGQPRRDY 408
            KG EA NV+GP+G +V G K      +R   RRGG        P  R GG GG+PR+D 
Sbjct: 91  EKGNEAANVTGPEGSNVQGSK---YAADRRRFRRGG------WYPRFRGGGRGGRPRQDM 141

Query: 409 ND 414
           +D
Sbjct: 142 DD 143

>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 322

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 57/142 (40%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
 Frame = +1

Query: 43  DYDVKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGEEVL 210
           D  V  +KV G VKWFN ++GYGFI ++    DVFVH               + DGE V 
Sbjct: 49  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 108

Query: 211 FDVIEGSKGLEARNVSGPDGGDVIGGKPFQQNDN--RSNMRRGGPRNDFRNQPYSRNG-- 378
           FDV+EG KG EA NV+GP G  V G K     ++  R   RRG PRN  +N   S +G  
Sbjct: 109 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEK 168

Query: 379 --------GGGGQPRRDYNDRQ 420
                    G  Q RR Y  R+
Sbjct: 169 NEGSESAPEGQAQQRRPYRRRR 190

>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 324

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 57/142 (40%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
 Frame = +1

Query: 43  DYDVKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGEEVL 210
           D  V  +KV G VKWFN ++GYGFI ++    DVFVH               + DGE V 
Sbjct: 51  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 110

Query: 211 FDVIEGSKGLEARNVSGPDGGDVIGGKPFQQNDN--RSNMRRGGPRNDFRNQPYSRNG-- 378
           FDV+EG KG EA NV+GP G  V G K     ++  R   RRG PRN  +N   S +G  
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEK 170

Query: 379 --------GGGGQPRRDYNDRQ 420
                    G  Q RR Y  R+
Sbjct: 171 NEGSESAPEGQAQQRRPYRRRR 192

>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 321

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 57/142 (40%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
 Frame = +1

Query: 43  DYDVKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGEEVL 210
           D  V  +KV G VKWFN ++GYGFI ++    DVFVH               + DGE V 
Sbjct: 48  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 107

Query: 211 FDVIEGSKGLEARNVSGPDGGDVIGGKPFQQNDN--RSNMRRGGPRNDFRNQPYSRNG-- 378
           FDV+EG KG EA NV+GP G  V G K     ++  R   RRG PRN  +N   S +G  
Sbjct: 108 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEK 167

Query: 379 --------GGGGQPRRDYNDRQ 420
                    G  Q RR Y  R+
Sbjct: 168 NEGAENIPEGQAQQRRPYRRRR 189

>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 303

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 51/119 (42%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
 Frame = +1

Query: 43  DYDVKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGEEVL 210
           D  V  +KV G VKWFN ++GYGFI ++    DVFVH               + DGE V 
Sbjct: 29  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 88

Query: 211 FDVIEGSKGLEARNVSGPDGGDVIGGK-PFQQNDNRSNMRRGGPRNDFRNQPYSRNGGG 384
           FDV+EG KG EA NV+GP+G  V G K    +N  R   RR GP  +++ Q Y  N  G
Sbjct: 89  FDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNNESG 146

>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
          Length = 305

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 49/112 (43%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = +1

Query: 61  SKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGEEVLFDVIEG 228
           +KV G VKWFN ++GYGFI ++    DVFVH               + DGE V FDV+EG
Sbjct: 35  TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 94

Query: 229 SKGLEARNVSGPDGGDVIGGKPFQQNDN--RSNMRRGGPRNDFRNQPYSRNG 378
            KG EA NV+GP    V G K     +N  R   RRG PRN  +N   S +G
Sbjct: 95  EKGAEAANVTGPGPVPVQGSKYAADRNNYRRYPRRRGPPRNYQQNYQNSESG 146

>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
           (mRNP4)
          Length = 336

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 51/134 (38%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
 Frame = +1

Query: 34  NMTDYDVKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGE 201
           N  +  V  ++V G VKWFN ++GYGFI ++    DVFVH               + DGE
Sbjct: 31  NQANKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGE 90

Query: 202 EVLFDVIEGSKGLEARNVSGPDGGDVIGGKPFQQNDNRSNMRRGGPRNDFRNQPYSRNGG 381
            V FDV+EG KG EA NV+GP GG  + G  F  N  R   R   PR D   +    +GG
Sbjct: 91  TVEFDVVEGEKGAEAANVTGP-GGVPVKGSRFAPNRRRFRRRFYRPRADTAGE----SGG 145

Query: 382 GGGQPRRDYNDRQG 423
            G  P +     +G
Sbjct: 146 EGVSPEQMSEGERG 159

>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
           3)
 sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
          Length = 361

 Score = 79.7 bits (195), Expect = 8e-15
 Identities = 50/123 (40%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
 Frame = +1

Query: 52  VKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHHXXXXXXXXXX----LADGEEVLFDV 219
           V  +KV G VKWFN ++GYGFI ++    DVFVH               + DGE V FDV
Sbjct: 78  VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 137

Query: 220 IEGSKGLEARNVSGPDGGDVIGGKPFQQNDNRS------NMRRGGPRNDFRNQPYSRNGG 381
           +EG KG EA NV+GPDG  V G +     D R         RRG PRN    +    +G 
Sbjct: 138 VEGEKGAEAANVTGPDGVPVEGSR--YAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGS 195

Query: 382 GGG 390
             G
Sbjct: 196 SEG 198

>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
           (mRNP3)
          Length = 324

 Score = 79.7 bits (195), Expect = 8e-15
 Identities = 49/134 (36%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
 Frame = +1

Query: 34  NMTDYDVKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHH----XXXXXXXXXXLADGE 201
           N  +  +  ++V G VKWFN ++GYGFI ++    DVFVH               + DGE
Sbjct: 31  NQINKKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGE 90

Query: 202 EVLFDVIEGSKGLEARNVSGPDGGDVIGGKPFQQNDNRSNMRRGGPRNDFRNQPYSRNGG 381
            V FDV+EG KG EA NV+GP GG  + G  F  N  R   +   PR D   +    +GG
Sbjct: 91  TVEFDVVEGEKGAEAANVTGP-GGVPVKGSRFAPNSTRFRRQFYRPRADTAGE----SGG 145

Query: 382 GGGQPRRDYNDRQG 423
            G  P +     +G
Sbjct: 146 EGVSPEQMSEGEKG 159

>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
           DNA binding protein NF-GMB)
          Length = 372

 Score = 79.7 bits (195), Expect = 8e-15
 Identities = 50/123 (40%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
 Frame = +1

Query: 52  VKESKVTGHVKWFNTKSGYGFIKKDSDGADVFVHHXXXXXXXXXX----LADGEEVLFDV 219
           V  +KV G VKWFN ++GYGFI ++    DVFVH               + DGE V FDV
Sbjct: 86  VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145

Query: 220 IEGSKGLEARNVSGPDGGDVIGGKPFQQNDNRS------NMRRGGPRNDFRNQPYSRNGG 381
           +EG KG EA NV+GPDG  V G +     D R         RRG PRN    +    +G 
Sbjct: 146 VEGEKGAEAANVTGPDGVPVEGSR--YAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGS 203

Query: 382 GGG 390
             G
Sbjct: 204 SEG 206

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,089,732
Number of Sequences: 369166
Number of extensions: 1527862
Number of successful extensions: 4424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4318
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00894

Planaria EST Database

DrC_00894

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail