Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F18
(529 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 40 0.003
sp|Q04047|NONA_DROME No-on-transient A protein (Puff-specif... 32 0.72
sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2... 32 0.95
sp|P60345|TRUB_RHOPA tRNA pseudouridine synthase B (tRNA ps... 31 2.1
sp|Q8NLG0|SSB_CORGL Single-strand binding protein (SSB) (He... 30 2.8
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 30 4.7
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein (G... 30 4.7
sp|Q9Y871|FAEB_PIREQ Feruloyl esterase B precursor (Ferulic... 30 4.7
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 29 6.1
sp|P46551|CD2L7_CAEEL Putative cell division cycle 2-relate... 29 6.1
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 40.0 bits (92), Expect = 0.003
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +3
Query: 3 GLEARNVSGPDGGDVIAGKVFHQNDNRSNMRRGGPRNDFRNQPYSRNGGGGGQPRRDYND 182
G EA NV+GP+G +V K +R RRGG P R GG GG+PR+D +D
Sbjct: 93 GNEAANVTGPEGSNVQGSKYAA---DRRRFRRGGW------YPRFRGGGRGGRPRQDMDD 143
>sp|Q04047|NONA_DROME No-on-transient A protein (Puff-specific protein Bj6)
Length = 700
Score = 32.3 bits (72), Expect = 0.72
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +3
Query: 3 GLEARNVSGPDGGDVIAGKVFHQNDNR--SNMRRGGPRNDFRNQPYSRNGGGGG 158
G RN GG G Q DNR S R GG N GGGGG
Sbjct: 207 GFRGRNAGNNQGGGFSGGPQNQQRDNRNRSGPRPGGGAGGAMNSTNMGGGGGGG 260
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430
Length = 653
Score = 32.0 bits (71), Expect = 0.95
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +3
Query: 54 GKVFHQNDNRSNMRRGGPRNDFRNQPYS----RNGGGGGQPRRDYNDRQGG 194
G H ++N RG R+DFR+ P NGGGGG R N+ GG
Sbjct: 166 GNSSHHSNNDDRYGRG--RDDFRSPPPRSYDYENGGGGGSDFRGDNNGYGG 214
>sp|P60345|TRUB_RHOPA tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase)
Length = 366
Score = 30.8 bits (68), Expect = 2.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 72 NDNRSNMRRGGPRNDFRNQPYSRNGGGGGQPRRDYNDRQG 191
+++ + +R+ ND RN + GGG G+PRRD D G
Sbjct: 21 DESAAQIRKPRDNNDPRN---ANRGGGNGKPRRDKRDVHG 57
>sp|Q8NLG0|SSB_CORGL Single-strand binding protein (SSB) (Helix-destabilizing protein)
Length = 225
Score = 30.4 bits (67), Expect = 2.8
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +3
Query: 3 GLEARNVSGPDGGDVIAGKVFHQNDNRSNMRRGGPRNDFRNQPYSRNGGGGGQPRRDY-- 176
G N G + G + G +Q SN GG + NQ S GG GG +
Sbjct: 125 GNSGGNYGGGNQGGGLGGNQGNQQGGFSNQNSGGFGGNQGNQQQSNQGGFGGNQNQSQGN 184
Query: 177 NDRQGG 194
N QGG
Sbjct: 185 NFNQGG 190
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 29.6 bits (65), Expect = 4.7
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 GLEARNVSGPDGGDVIAGKVFHQNDN--RSNMRRGGPRNDFRNQPYSRNG 146
G EA NV+GP V K +N R RRG PRN +N S +G
Sbjct: 97 GAEAANVTGPGPVPVQGSKYAADRNNYRRYPRRRGPPRNYQQNYQNSESG 146
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein (Glycine-rich RNA-binding
protein CIRP) (A18 hnRNP)
Length = 172
Score = 29.6 bits (65), Expect = 4.7
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Frame = +3
Query: 12 ARNVSGPDGGDVIAGKVFHQNDNRSNMRRGGP---RNDF-----RNQPYSRNGGGGGQPR 167
A N DG + + +DNRS RGG R F R + +SR GG G
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG 125
Query: 168 RDYNDRQGG 194
+ R GG
Sbjct: 126 NRFESRSGG 134
>sp|Q9Y871|FAEB_PIREQ Feruloyl esterase B precursor (Ferulic acid esterase B) (Esterase
A) (EstA) (Cinnamoyl ester hydrolase)
Length = 536
Score = 29.6 bits (65), Expect = 4.7
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Frame = +3
Query: 3 GLEARNVSGPDGGDVIAGKVFHQNDNRSNMRRGGPRNDFR-NQPYSRNGG---------- 149
G++ + G GG + G D N G P DF NQ ++ GG
Sbjct: 95 GMQWGDFGGNQGGGMPWG------DFGGNQGGGMPWGDFGGNQGGNQGGGMPWGDFGGNQ 148
Query: 150 ----GGGQPRRDYNDRQGGDIQFGRY 215
GGG P D+ QGG +Q+G +
Sbjct: 149 GGNQGGGMPWGDFGGNQGGGMQWGDF 174
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein
A1-A) (PEN repeat clone P9)
Length = 365
Score = 29.3 bits (64), Expect = 6.1
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 33 DGGDVIAGKVFHQNDNRSNMRRGGPRNDFRNQPYSRNGG---GGGQPRRDYNDRQG 191
+GG+ G + QN R GG N+ R QPY GG GGG + QG
Sbjct: 302 NGGNDFGG--YQQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQG 355
>sp|P46551|CD2L7_CAEEL Putative cell division cycle 2-related protein kinase 7
Length = 730
Score = 29.3 bits (64), Expect = 6.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 21/63 (33%)
Frame = +3
Query: 63 FHQNDNRSNMRRG-GPRN---------DFRNQPYSRNGGGGGQPR-----------RDYN 179
F+ D R + R+G PR+ ++ + +SR GGGGG+ R +DYN
Sbjct: 34 FYSKDKRGSSRQGVRPRDRDSKDSISPQYKQRNWSRGGGGGGRDRGRNDFSYRKKGKDYN 93
Query: 180 DRQ 188
R+
Sbjct: 94 KRR 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,280,992
Number of Sequences: 369166
Number of extensions: 985332
Number of successful extensions: 3256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3211
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)