DrC_00889
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00889 (721 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|O60879|DIAP2_HUMAN Diaphanous protein homolog 2 (Diaphan... 39 0.011 sp|Q9UPN6|RBM16_HUMAN Putative RNA-binding protein 16 (RNA-... 38 0.024 sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 36 0.091 sp|O95835|LATS1_HUMAN Serine/threonine-protein kinase LATS1... 36 0.091 sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 36 0.091 sp|Q83949|Y066_NPVOP Hypothetical 98.6 kDa protein (ORF71) 36 0.091 sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein 35 0.15 sp|O95466|FMNL_HUMAN Formin-like 1 protein (Formin-like pro... 35 0.20 sp|P32521|PAN1_YEAST PAN1 protein 35 0.20 sp|P18573|GDA9_WHEAT Alpha/beta-gliadin MM1 precursor (Prol... 35 0.26
>sp|O60879|DIAP2_HUMAN Diaphanous protein homolog 2 (Diaphanous-related formin-2) (DRF2) Length = 1101 Score = 39.3 bits (90), Expect = 0.011 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Frame = +2 Query: 347 LRTQQPTVTVMNSNMMSEGEFVSPPYAVVYPPGQAPYPH--GQLPYPPAYPDIKSNQQGP 520 LRTQ V++S+ G +PP V PP P P G P PP P + P Sbjct: 535 LRTQ---AQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPPLPGGAPLPPPPPPLPGMMGIP 591 Query: 521 IPPYPANVNQENPPPYNLGFVP 586 PP P + PPP LG VP Sbjct: 592 PPPPPPLLFGGPPPPPPLGGVP 613
>sp|Q9UPN6|RBM16_HUMAN Putative RNA-binding protein 16 (RNA-binding motif protein 16) Length = 1271 Score = 38.1 bits (87), Expect = 0.024 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Frame = +2 Query: 344 VLRTQQPTVTVMNSNMMSEGEFVSPPYAVVYPPGQAPYPHGQLPYPPAYP---DIKSNQQ 514 V TQ PT + + ++ E PP A++ P P L PPA+P + Sbjct: 612 VQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSL-VPPAFPVSMPVPPPGF 670 Query: 515 GPIPPYP---ANVNQENPPPYNLGFVP 586 PIPP P A+ N PPP GF+P Sbjct: 671 SPIPPPPFLRASFNPSQPPP---GFMP 694
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) Length = 639 Score = 36.2 bits (82), Expect = 0.091 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +2 Query: 392 MSEGEFVSPPYAVVYPPGQAPYPHGQLPYPPAYPDIKSNQQGPIPPYPANVNQENPPP 565 + +G+ + PP + P P P GQ P PP+ GP+PP+ Q PPP Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPS---------GPLPPWQQQQQQPPPPP 511
>sp|O95835|LATS1_HUMAN Serine/threonine-protein kinase LATS1 (Large tumor suppressor homolog 1) (WARTS protein kinase) (h-warts) Length = 1130 Score = 36.2 bits (82), Expect = 0.091 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +2 Query: 407 FVSPPYAVVYPPGQAPYPHGQLPYPPAYPDIKS--NQQGPIPPYPANVNQENP--PPY 568 ++ P V P +P+P G P + N QGP PPYP ++ +NP PPY Sbjct: 519 WIPQPIQTVQP---SPFPEGTASNVTVMPPVAEAPNYQGPPPPYPKHLLHQNPSVPPY 573
Score = 30.8 bits (68), Expect = 3.8
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 19/78 (24%)
Frame = +2
Query: 395 SEGEFVSPP-----YAVVYPP---GQAPYPHGQLPYPPAYPDIKSNQQ---------GPI 523
S G+ V+PP +V PP GQ P P G P PP++ ++ I
Sbjct: 229 SNGQRVNPPPPPQVRSVTPPPPPRGQTPPPRGTTPPPPSWEPNSQTKRYSGNMEYVISRI 288
Query: 524 PPYPANVNQEN--PPPYN 571
P P QE PPP N
Sbjct: 289 SPVPPGAWQEGYPPPPLN 306
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point binding protein mBBP) (BBP) (CW17) Length = 653 Score = 36.2 bits (82), Expect = 0.091 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +2 Query: 392 MSEGEFVSPPYAVVYPPGQAPYPHGQLPYPPAYPDIKSNQQGPIPPYPANVNQENPPP 565 + +G+ + PP + P P P GQ P PP+ GP+PP+ Q PPP Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPS---------GPLPPWQQQQQQPPPPP 511
>sp|Q83949|Y066_NPVOP Hypothetical 98.6 kDa protein (ORF71) Length = 875 Score = 36.2 bits (82), Expect = 0.091 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Frame = +2 Query: 419 PYAVVYP--PGQAPYPHGQLPYPPAYPDIKSNQQGPIPPYPANVNQE--NPPPYNLGFV 583 PY +P P Q P Q P PP P + QQ P PP P + PPP L V Sbjct: 94 PYGQYWPQQPPQPPPDQPQQPQPPQQPPQQPPQQQPQPPQPPQQPPQPPQPPPQQLALV 152
>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein Length = 390 Score = 35.4 bits (80), Expect = 0.15 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Frame = +2 Query: 416 PPYAVVYPP----------GQAPYPHGQLPYPPAYPDIKSNQQGPIPPYPANVNQENPPP 565 PPY PP G +PYP G P P YP GP P ++ PP Sbjct: 151 PPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPATTSSQYPSQPPV 210 Query: 566 YNLG 577 +G Sbjct: 211 TTVG 214
>sp|O95466|FMNL_HUMAN Formin-like 1 protein (Formin-like protein) (Leukocyte formin) (CLL-associated antigen KW-13) Length = 1100 Score = 35.0 bits (79), Expect = 0.20 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Frame = +2 Query: 413 SPPYAVVYP----PGQAPYPHGQLPYPPAYPDIKSNQQGPIPPYPANVNQENPPPYNLGF 580 +PP A P P AP G LP PP P GP+PP P PPP G Sbjct: 561 APPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPP------PPPPPPGG 614 Query: 581 VPD 589 PD Sbjct: 615 PPD 617
>sp|P32521|PAN1_YEAST PAN1 protein Length = 1480 Score = 35.0 bits (79), Expect = 0.20 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Frame = +2 Query: 386 NMMSEGEFVSPPYAVVYPPGQAPYPHGQLPYPPAYPDIKSNQQG------PIPPYPANVN 547 N + E + P +A P AP P P PPA P ++N PI P P +V Sbjct: 1294 NKVEEAKIGHPDHARAPPVTAAPLP-SVTPVPPAVPVPQANTSNEKSSPIPIAPIPPSVT 1352 Query: 548 QENPPP 565 QE P P Sbjct: 1353 QEPPVP 1358
>sp|P18573|GDA9_WHEAT Alpha/beta-gliadin MM1 precursor (Prolamin) Length = 307 Score = 34.7 bits (78), Expect = 0.26 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = +2 Query: 434 YPPGQAPYPHGQLPYP-PAYPDIKSNQQGPIPPYPANVNQENPP 562 +P Q PYP QLPYP P P + P PYP + Q + P Sbjct: 81 FPQPQLPYPQPQLPYPQPQLPYPQPQPFRPQQPYPQSQPQYSQP 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,135,775
Number of Sequences: 369166
Number of extensions: 1292146
Number of successful extensions: 5940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5496
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
