Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_G15
(399 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q37024|NU5M_PICCA NADH-ubiquinone oxidoreductase chain 5 28 5.0
sp|P00722|BGAL_ECOLI Beta-galactosidase (Lactase) 28 8.6
>sp|Q37024|NU5M_PICCA NADH-ubiquinone oxidoreductase chain 5
Length = 644
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 15 FIRCISSIFPFLLLLYVLASYRSMHQNXXXXXXXXXXXXANQVIILIIVV 164
FI I IF + L+Y++ Y+S++ + N +IIL +V+
Sbjct: 168 FINKIGDIFFIIALIYLIYIYKSLNYSLIFSLVSYINIDINNIIILCLVI 217
>sp|P00722|BGAL_ECOLI Beta-galactosidase (Lactase)
Length = 1024
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 396 DIIFEFITVTVGCCVLRTRPLL*IPVRLEQIHPQHIAIISDTTIINMIL 250
D+ F + + G +L +PLL V + HP H ++ + T++ IL
Sbjct: 330 DVGFREVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDIL 378
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,550,412
Number of Sequences: 369166
Number of extensions: 446068
Number of successful extensions: 980
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)