Planarian EST Database

DrC_00880

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00880 TTGACAAAAATGCTGAATTTAAGATATTATTTGGACAAGGATGGTAAAAGAGTCTACACT CTTAAGTCTTTTGACCCTAATATGAAACCTACTATATCCGCACATCCAGCCAAATATTCC CCTGAAGATAAATTTTCTGAAGAAAGAATATTGATGAAGAGGCGATACAAAATTTTGCCC CCTCAAATGCCTGCATATAAATATTAACTTTCCATGGTTTGAACTCCATGTATAAATTGA ATGAATGAAATTGAAATTACTATTTCATTAATAGTTGGTTGTGTGATTAATAAAATTTGG TCCTGGATTTTC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00880
         (312 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQS2|NOLA3_MOUSE  H/ACA ribonucleoprotein complex subun...    76   2e-14
sp|Q6DRH5|NOLA3_BRARE  H/ACA ribonucleoprotein complex subun...    74   8e-14
sp|Q9P7M5|NOP10_SCHPO  H/ACA ribonucleoprotein complex subun...    74   1e-13
sp|Q9XVR8|NOLA3_CAEEL  Putative H/ACA ribonucleoprotein comp...    68   6e-12
sp|Q6FNL3|NOP10_CANGA  H/ACA ribonucleoprotein complex subun...    68   6e-12
sp|Q6JZK2|NOLA3_TRYCR  H/ACA ribonucleoprotein complex subun...    68   6e-12
sp|Q6CSZ0|NOP10_KLULA  H/ACA ribonucleoprotein complex subun...    67   1e-11
sp|Q74Z52|NOP10_ASHGO  H/ACA ribonucleoprotein complex subun...    67   1e-11
sp|Q9V5P6|NOLA3_DROME  H/ACA ribonucleoprotein complex subun...    65   4e-11
sp|Q6Q547|NOP10_YEAST  H/ACA ribonucleoprotein complex subun...    64   1e-10

>sp|Q9CQS2|NOLA3_MOUSE H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein NOP10)
 sp|Q9NPE3|NOLA3_HUMAN H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein NOP10)
          Length = 64

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 33/58 (56%), Positives = 45/58 (77%)
 Frame = +1

Query: 19  LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 192
           L+YYL++ G RVYTLK FDP  + T SAHPA++SP+DK+S  RI +K+R+K+L  Q P
Sbjct: 3   LQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

>sp|Q6DRH5|NOLA3_BRARE H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3)
          Length = 64

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 31/58 (53%), Positives = 47/58 (81%)
 Frame = +1

Query: 19  LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 192
           L++YL+++G+RVYTLK  DP+ +PT SAHPA++SP+DKFS  R+ +K+R+ +L  Q P
Sbjct: 3   LQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

>sp|Q9P7M5|NOP10_SCHPO H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein nop10)
          Length = 64

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +1

Query: 13  LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 192
           ++L YYL+ +GKRVYTLK   P+ + T S+HPA++SP+DK+S +R  +K+R+ +L  Q+P
Sbjct: 1   MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60

Query: 193 AYKY 204
           A  Y
Sbjct: 61  AKPY 64

>sp|Q9XVR8|NOLA3_CAEEL Putative H/ACA ribonucleoprotein complex subunit 3-like protein
          Length = 64

 Score = 68.2 bits (165), Expect = 6e-12
 Identities = 30/56 (53%), Positives = 46/56 (82%)
 Frame = +1

Query: 19  LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQ 186
           LRY+LD++ +RVYTLK   P+ + T++AHPA++SPEDK S+ RI++K+R+ +LP Q
Sbjct: 3   LRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQ 58

>sp|Q6FNL3|NOP10_CANGA H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein NOP10)
          Length = 57

 Score = 68.2 bits (165), Expect = 6e-12
 Identities = 29/56 (51%), Positives = 42/56 (75%)
 Frame = +1

Query: 13  LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILP 180
           ++L Y LD +GKRVYTLK      + T SAHPA++SP+DK+S +R+ +K+RY +LP
Sbjct: 1   MHLMYTLDNEGKRVYTLKKMTEEGEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56

>sp|Q6JZK2|NOLA3_TRYCR H/ACA ribonucleoprotein complex subunit 3-like protein (Ribosome
           biogenesis protein Nop10)
          Length = 63

 Score = 68.2 bits (165), Expect = 6e-12
 Identities = 31/55 (56%), Positives = 43/55 (78%)
 Frame = +1

Query: 13  LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKIL 177
           ++L+ Y+  +GKR YTLK  DP  KPT+SAHPA++SP+DK+S  RI +KRR+K L
Sbjct: 1   MHLQVYI-VNGKRQYTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKAL 54

>sp|Q6CSZ0|NOP10_KLULA H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein NOP10)
          Length = 57

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 28/56 (50%), Positives = 42/56 (75%)
 Frame = +1

Query: 13  LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILP 180
           ++L Y LD  GKR+YTLK    + + T SAHPA++SP+DK+S +R+ +K+RY +LP
Sbjct: 1   MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56

>sp|Q74Z52|NOP10_ASHGO H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein NOP10)
          Length = 57

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 29/56 (51%), Positives = 43/56 (76%)
 Frame = +1

Query: 13  LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILP 180
           ++L Y L  DGKRVYTL+   P+ + T SAHPA++SP+DK+S +R+ +KRR+ +LP
Sbjct: 1   MHLMYTLGPDGKRVYTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDMLP 56

>sp|Q9V5P6|NOLA3_DROME H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein dNop10)
          Length = 64

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 28/58 (48%), Positives = 44/58 (75%)
 Frame = +1

Query: 19  LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 192
           L Y ++++G RVYTLK    + +PT+SAHPA++SPEDK+S +R+ +K+R+ +L  Q P
Sbjct: 3   LMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

>sp|Q6Q547|NOP10_YEAST H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
           A member 3) (snoRNP protein NOP10)
          Length = 58

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 27/58 (46%), Positives = 43/58 (74%)
 Frame = +1

Query: 13  LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQ 186
           ++L Y L  DGKR+YTLK    + + T SAHPA++SP+DK+S +R+ +K+R+ ++P Q
Sbjct: 1   MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,294,630
Number of Sequences: 369166
Number of extensions: 599816
Number of successful extensions: 1427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00880

Planaria EST Database

DrC_00880

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail