Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P08
(307 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQS2|NOLA3_MOUSE H/ACA ribonucleoprotein complex subun... 76 2e-14
sp|Q6DRH5|NOLA3_BRARE H/ACA ribonucleoprotein complex subun... 74 8e-14
sp|Q9P7M5|NOP10_SCHPO H/ACA ribonucleoprotein complex subun... 74 1e-13
sp|Q9XVR8|NOLA3_CAEEL Putative H/ACA ribonucleoprotein comp... 68 6e-12
sp|Q6FNL3|NOP10_CANGA H/ACA ribonucleoprotein complex subun... 68 6e-12
sp|Q6JZK2|NOLA3_TRYCR H/ACA ribonucleoprotein complex subun... 68 6e-12
sp|Q6CSZ0|NOP10_KLULA H/ACA ribonucleoprotein complex subun... 67 1e-11
sp|Q74Z52|NOP10_ASHGO H/ACA ribonucleoprotein complex subun... 67 1e-11
sp|Q9V5P6|NOLA3_DROME H/ACA ribonucleoprotein complex subun... 65 4e-11
sp|Q6Q547|NOP10_YEAST H/ACA ribonucleoprotein complex subun... 64 1e-10
>sp|Q9CQS2|NOLA3_MOUSE H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein NOP10)
sp|Q9NPE3|NOLA3_HUMAN H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein NOP10)
Length = 64
Score = 76.3 bits (186), Expect = 2e-14
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +2
Query: 14 LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 187
L+YYL++ G RVYTLK FDP + T SAHPA++SP+DK+S RI +K+R+K+L Q P
Sbjct: 3 LQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>sp|Q6DRH5|NOLA3_BRARE H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3)
Length = 64
Score = 74.3 bits (181), Expect = 8e-14
Identities = 31/58 (53%), Positives = 47/58 (81%)
Frame = +2
Query: 14 LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 187
L++YL+++G+RVYTLK DP+ +PT SAHPA++SP+DKFS R+ +K+R+ +L Q P
Sbjct: 3 LQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60
>sp|Q9P7M5|NOP10_SCHPO H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein nop10)
Length = 64
Score = 73.6 bits (179), Expect = 1e-13
Identities = 31/64 (48%), Positives = 48/64 (75%)
Frame = +2
Query: 8 LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 187
++L YYL+ +GKRVYTLK P+ + T S+HPA++SP+DK+S +R +K+R+ +L Q+P
Sbjct: 1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60
Query: 188 AYKY 199
A Y
Sbjct: 61 AKPY 64
>sp|Q9XVR8|NOLA3_CAEEL Putative H/ACA ribonucleoprotein complex subunit 3-like protein
Length = 64
Score = 68.2 bits (165), Expect = 6e-12
Identities = 30/56 (53%), Positives = 46/56 (82%)
Frame = +2
Query: 14 LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQ 181
LRY+LD++ +RVYTLK P+ + T++AHPA++SPEDK S+ RI++K+R+ +LP Q
Sbjct: 3 LRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQ 58
>sp|Q6FNL3|NOP10_CANGA H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein NOP10)
Length = 57
Score = 68.2 bits (165), Expect = 6e-12
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +2
Query: 8 LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILP 175
++L Y LD +GKRVYTLK + T SAHPA++SP+DK+S +R+ +K+RY +LP
Sbjct: 1 MHLMYTLDNEGKRVYTLKKMTEEGEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
>sp|Q6JZK2|NOLA3_TRYCR H/ACA ribonucleoprotein complex subunit 3-like protein (Ribosome
biogenesis protein Nop10)
Length = 63
Score = 68.2 bits (165), Expect = 6e-12
Identities = 31/55 (56%), Positives = 43/55 (78%)
Frame = +2
Query: 8 LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKIL 172
++L+ Y+ +GKR YTLK DP KPT+SAHPA++SP+DK+S RI +KRR+K L
Sbjct: 1 MHLQVYI-VNGKRQYTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKAL 54
>sp|Q6CSZ0|NOP10_KLULA H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein NOP10)
Length = 57
Score = 67.4 bits (163), Expect = 1e-11
Identities = 28/56 (50%), Positives = 42/56 (75%)
Frame = +2
Query: 8 LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILP 175
++L Y LD GKR+YTLK + + T SAHPA++SP+DK+S +R+ +K+RY +LP
Sbjct: 1 MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
>sp|Q74Z52|NOP10_ASHGO H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein NOP10)
Length = 57
Score = 67.0 bits (162), Expect = 1e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = +2
Query: 8 LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILP 175
++L Y L DGKRVYTL+ P+ + T SAHPA++SP+DK+S +R+ +KRR+ +LP
Sbjct: 1 MHLMYTLGPDGKRVYTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDMLP 56
>sp|Q9V5P6|NOLA3_DROME H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein dNop10)
Length = 64
Score = 65.5 bits (158), Expect = 4e-11
Identities = 28/58 (48%), Positives = 44/58 (75%)
Frame = +2
Query: 14 LRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQMP 187
L Y ++++G RVYTLK + +PT+SAHPA++SPEDK+S +R+ +K+R+ +L Q P
Sbjct: 3 LMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60
>sp|Q6Q547|NOP10_YEAST H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family
A member 3) (snoRNP protein NOP10)
Length = 58
Score = 63.9 bits (154), Expect = 1e-10
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = +2
Query: 8 LNLRYYLDKDGKRVYTLKSFDPNMKPTISAHPAKYSPEDKFSEERILMKRRYKILPPQ 181
++L Y L DGKR+YTLK + + T SAHPA++SP+DK+S +R+ +K+R+ ++P Q
Sbjct: 1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,529,965
Number of Sequences: 369166
Number of extensions: 585430
Number of successful extensions: 1316
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)