Planaria EST Database

DrC_00873

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00873
         (549 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30736|RL15_CHITE  60S ribosomal protein L15 (YL10)            214   1e-55
sp|Q9CZM2|RL15_MOUSE  60S ribosomal protein L15 >gi|47117719...   209   4e-54
sp|P51417|RL15_CHICK  60S ribosomal protein L15 (L10)             206   3e-53
sp|Q7T3P1|RL15_ANGJA  60S ribosomal protein L15                   206   3e-53
sp|Q7T3N2|RL15_MONAL  60S ribosomal protein L15                   205   7e-53
sp|Q7T2N4|RL15_SILME  60S ribosomal protein L15                   204   9e-53
sp|Q7T3M9|RL15_SINKN  60S ribosomal protein L15                   204   9e-53
sp|Q90YV2|RL15_ICTPU  60S ribosomal protein L15                   204   9e-53
sp|O23515|RL15_ARATH  60S ribosomal protein L15                   203   3e-52
sp|Q7T3N6|RL15_HYPMO  60S ribosomal protein L15                   203   3e-52

>sp|P30736|RL15_CHITE 60S ribosomal protein L15 (YL10)
          Length = 204

 Score =  214 bits (545), Expect = 1e-55
 Identities = 101/167 (60%), Positives = 123/167 (73%)
 Frame = +1

Query: 16  RLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 195
           R  +P+RPD+ARRLGYKAKQGF+I                  TYGKP + GVNQLK  R+
Sbjct: 38  RAPRPSRPDKARRLGYKAKQGFLIYRIRVRRGGRKRPVHKGCTYGKPKSHGVNQLKPYRN 97

Query: 196 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 375
            Q++AEERVGR+   LRVLNSYWV +D+ F + EVICVDP H A+R DPK+NW+CN+V K
Sbjct: 98  LQSVAEERVGRRMGGLRVLNSYWVAQDAAFKYYEVICVDPFHNAVRRDPKVNWVCNAVHK 157

Query: 376 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           HRELRGLTSA K SRG+GKG+R++ TIGGSR A WRR N++ LRR R
Sbjct: 158 HRELRGLTSAGKSSRGVGKGYRYSQTIGGSRRAAWRRKNRLHLRRYR 204

>sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15
 sp|P61314|RL15_RAT 60S ribosomal protein L15
 sp|Q5NVE0|RL15_PONPY 60S ribosomal protein L15
 sp|P61313|RL15_HUMAN 60S ribosomal protein L15
          Length = 204

 Score =  209 bits (532), Expect = 4e-54
 Identities = 104/167 (62%), Positives = 119/167 (71%)
 Frame = +1

Query: 16  RLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 195
           R  +PTRPD+ARRLGYKAKQG+VI                 ATYGKPV+ GVNQLK  RS
Sbjct: 38  RAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARS 97

Query: 196 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 375
            Q++AEER GR   +LRVLNSYWVGEDST+ F EVI +DP H AIR +P   WI   V K
Sbjct: 98  LQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHK 157

Query: 376 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           HRE+RGLTSA +KSRGLGKGH+F HTIGGSR A WRR N ++L R R
Sbjct: 158 HREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

>sp|P51417|RL15_CHICK 60S ribosomal protein L15 (L10)
          Length = 165

 Score =  206 bits (524), Expect = 3e-53
 Identities = 102/164 (62%), Positives = 117/164 (71%)
 Frame = +1

Query: 25  KPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQA 204
           +PTRPD+ARRLGYKAKQG+VI                 ATYGKPV+ GVNQLK  RS Q+
Sbjct: 2   RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQS 61

Query: 205 IAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQKHRE 384
           +AEER GR   +LRVLNSYWVGEDST+ F EVI +DP H  IR +P   WI   V KHRE
Sbjct: 62  VAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHRE 121

Query: 385 LRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           +RGLTSA +KSRGLGKGH+F HTIGGSR A WRR N ++L R R
Sbjct: 122 MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 165

>sp|Q7T3P1|RL15_ANGJA 60S ribosomal protein L15
          Length = 204

 Score =  206 bits (524), Expect = 3e-53
 Identities = 103/167 (61%), Positives = 118/167 (70%)
 Frame = +1

Query: 16  RLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 195
           R  +PTRPD+ARRLGYKAKQG+VI                 ATYGKPV+ GVNQ+K  RS
Sbjct: 38  RAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARS 97

Query: 196 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 375
            Q+ AEER GR   +LRVLNSYWVGEDST+ F EVI +DP H A+R DP   WI  +V K
Sbjct: 98  LQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRDPDAQWITKAVHK 157

Query: 376 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           HRE+RGLTSA KKSRGLGKGH+F  TIGGSR A WRR N ++L R R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204

>sp|Q7T3N2|RL15_MONAL 60S ribosomal protein L15
          Length = 204

 Score =  205 bits (521), Expect = 7e-53
 Identities = 102/167 (61%), Positives = 119/167 (71%)
 Frame = +1

Query: 16  RLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 195
           R  +PTRPD+ARRLGYKAKQG+VI                 ATYGKPV+ GVNQ+K  RS
Sbjct: 38  RAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARS 97

Query: 196 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 375
            Q++AEER GR   +LRVLNSYWVGEDST+ F EVI +DP H AIR +P   WI  +V K
Sbjct: 98  LQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKAVHK 157

Query: 376 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           HRE+RGLTSA KKSRGLGKGH+F  TIGGSR A W+R N ++L R R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204

>sp|Q7T2N4|RL15_SILME 60S ribosomal protein L15
          Length = 204

 Score =  204 bits (520), Expect = 9e-53
 Identities = 104/167 (62%), Positives = 118/167 (70%)
 Frame = +1

Query: 16  RLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 195
           R  +PTRPD+ARRLGYKAKQG+VI                 ATYGKPV+ GVNQLK  RS
Sbjct: 38  RAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARS 97

Query: 196 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 375
            Q+IAEER GR    LRVLNSYWVGEDST+ F EVI +D  H AIR +P + WI  +V K
Sbjct: 98  LQSIAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDMQWITKAVHK 157

Query: 376 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           HRE+RGLTSA KKSRGLGKGH+F  TIGGSR A WRR N ++L R R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204

>sp|Q7T3M9|RL15_SINKN 60S ribosomal protein L15
          Length = 204

 Score =  204 bits (520), Expect = 9e-53
 Identities = 101/167 (60%), Positives = 119/167 (71%)
 Frame = +1

Query: 16  RLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 195
           R  +PTRPD+ARRLGYKAKQG+V+                 ATYGKPV+ GVNQ+K  RS
Sbjct: 38  RAPRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARS 97

Query: 196 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 375
            Q+ AEER GR   +LRVLNSYWVGEDST+ F EVI +DP H A+R +P   WI  +V K
Sbjct: 98  LQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRNPDTQWITKAVHK 157

Query: 376 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           HRE+RGLTSA KKSRGLGKGH+F  TIGGSR A W+R N ++LRR R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWKRRNTLQLRRYR 204

>sp|Q90YV2|RL15_ICTPU 60S ribosomal protein L15
          Length = 204

 Score =  204 bits (520), Expect = 9e-53
 Identities = 104/167 (62%), Positives = 118/167 (70%)
 Frame = +1

Query: 16  RLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 195
           R  +PTRPD+ARRLGYKAKQG+VI                 ATYGKPV+ GVNQLK  RS
Sbjct: 38  RAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARS 97

Query: 196 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 375
            Q++AEER GR    LRVLNSYWVGEDST+ F EVI +D  H AIR +P   WI  +V K
Sbjct: 98  LQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHK 157

Query: 376 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           HRE+RGLTSA KKSRGLGKGH+F  TIGGSR A WRR N ++LRR R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAPWRRRNTLQLRRYR 204

>sp|O23515|RL15_ARATH 60S ribosomal protein L15
          Length = 204

 Score =  203 bits (516), Expect = 3e-52
 Identities = 102/171 (59%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 7   SIVRLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKN 186
           SIVRL +PTRPD+ARRLGYKAKQGFV+                   YGKP N+GV QLK 
Sbjct: 35  SIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKF 94

Query: 187 QRSNQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNS 366
           QRS +++AEER GRK   LRV+NSYW+ EDST+ + E+I VDPAH A+R DP+INWICN 
Sbjct: 95  QRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNP 154

Query: 367 VQKHRELRGLTSANKKSRGL-GKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           V KHRELRGLTS  KK+RGL GKGH   H    SR A W++NN + LRR R
Sbjct: 155 VHKHRELRGLTSEGKKNRGLRGKGHN-NHKNRPSRRATWKKNNSLSLRRYR 204

>sp|Q7T3N6|RL15_HYPMO 60S ribosomal protein L15
          Length = 204

 Score =  203 bits (516), Expect = 3e-52
 Identities = 102/170 (60%), Positives = 120/170 (70%)
 Frame = +1

Query: 7   SIVRLSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKN 186
           S+ R  +PTRPD+ARRLGYKAKQG+VI                 ATYGKPV+ GVNQ+K 
Sbjct: 35  SLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKF 94

Query: 187 QRSNQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNS 366
            RS Q++AEER GR    LRVLNSYWVGEDST+ F EVI +D  H AIR +P   WI  +
Sbjct: 95  ARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKA 154

Query: 367 VQKHRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 516
           V+KHRE+RGLTSA KKSRGLGKGH+F  TIGGSR A W+R N ++L R R
Sbjct: 155 VRKHREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,387,412
Number of Sequences: 369166
Number of extensions: 943389
Number of successful extensions: 2452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00873

  1. Dr_sW_022_A21
  2. Dr_sW_013_P06