Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_P06
(537 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30736|RL15_CHITE 60S ribosomal protein L15 (YL10) 214 8e-56
sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15 >gi|47117719... 209 3e-54
sp|Q7T3P1|RL15_ANGJA 60S ribosomal protein L15 206 2e-53
sp|P51417|RL15_CHICK 60S ribosomal protein L15 (L10) 206 3e-53
sp|Q7T3N2|RL15_MONAL 60S ribosomal protein L15 205 5e-53
sp|Q7T2N4|RL15_SILME 60S ribosomal protein L15 205 7e-53
sp|Q7T3M9|RL15_SINKN 60S ribosomal protein L15 205 7e-53
sp|Q90YV2|RL15_ICTPU 60S ribosomal protein L15 205 7e-53
sp|O17445|RL15_DROME 60S ribosomal protein L15 202 3e-52
sp|Q7T3N6|RL15_HYPMO 60S ribosomal protein L15 202 4e-52
>sp|P30736|RL15_CHITE 60S ribosomal protein L15 (YL10)
Length = 204
Score = 214 bits (546), Expect = 8e-56
Identities = 101/167 (60%), Positives = 123/167 (73%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +P+RPD+ARRLGYKAKQGF+I TYGKP + GVNQLK R+
Sbjct: 38 RAPRPSRPDKARRLGYKAKQGFLIYRIRVRRGGRKRPVHKGCTYGKPKSHGVNQLKPYRN 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q++AEERVGR+ LRVLNSYWV +D+ F + EVICVDP H A+R DPK+NW+CN+V K
Sbjct: 98 LQSVAEERVGRRMGGLRVLNSYWVAQDAAFKYYEVICVDPFHNAVRRDPKVNWVCNAVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRELRGLTSA K SRG+GKG+R++ TIGGSR A WRR N++ LRR R
Sbjct: 158 HRELRGLTSAGKSSRGVGKGYRYSQTIGGSRRAAWRRKNRLHLRRYR 204
>sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15
sp|P61314|RL15_RAT 60S ribosomal protein L15
sp|Q5NVE0|RL15_PONPY 60S ribosomal protein L15
sp|P61313|RL15_HUMAN 60S ribosomal protein L15
Length = 204
Score = 209 bits (533), Expect = 3e-54
Identities = 104/167 (62%), Positives = 119/167 (71%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGYKAKQG+VI ATYGKPV+ GVNQLK RS
Sbjct: 38 RAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARS 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q++AEER GR +LRVLNSYWVGEDST+ F EVI +DP H AIR +P WI V K
Sbjct: 98 LQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRE+RGLTSA +KSRGLGKGH+F HTIGGSR A WRR N ++L R R
Sbjct: 158 HREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204
>sp|Q7T3P1|RL15_ANGJA 60S ribosomal protein L15
Length = 204
Score = 206 bits (525), Expect = 2e-53
Identities = 103/167 (61%), Positives = 118/167 (70%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGYKAKQG+VI ATYGKPV+ GVNQ+K RS
Sbjct: 38 RAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARS 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q+ AEER GR +LRVLNSYWVGEDST+ F EVI +DP H A+R DP WI +V K
Sbjct: 98 LQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRDPDAQWITKAVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRE+RGLTSA KKSRGLGKGH+F TIGGSR A WRR N ++L R R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204
>sp|P51417|RL15_CHICK 60S ribosomal protein L15 (L10)
Length = 165
Score = 206 bits (524), Expect = 3e-53
Identities = 102/164 (62%), Positives = 117/164 (71%)
Frame = +1
Query: 13 KPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQA 192
+PTRPD+ARRLGYKAKQG+VI ATYGKPV+ GVNQLK RS Q+
Sbjct: 2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQS 61
Query: 193 IAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQKHRE 372
+AEER GR +LRVLNSYWVGEDST+ F EVI +DP H IR +P WI V KHRE
Sbjct: 62 VAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHRE 121
Query: 373 LRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
+RGLTSA +KSRGLGKGH+F HTIGGSR A WRR N ++L R R
Sbjct: 122 MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 165
>sp|Q7T3N2|RL15_MONAL 60S ribosomal protein L15
Length = 204
Score = 205 bits (522), Expect = 5e-53
Identities = 102/167 (61%), Positives = 119/167 (71%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGYKAKQG+VI ATYGKPV+ GVNQ+K RS
Sbjct: 38 RAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARS 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q++AEER GR +LRVLNSYWVGEDST+ F EVI +DP H AIR +P WI +V K
Sbjct: 98 LQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKAVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRE+RGLTSA KKSRGLGKGH+F TIGGSR A W+R N ++L R R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204
>sp|Q7T2N4|RL15_SILME 60S ribosomal protein L15
Length = 204
Score = 205 bits (521), Expect = 7e-53
Identities = 104/167 (62%), Positives = 118/167 (70%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGYKAKQG+VI ATYGKPV+ GVNQLK RS
Sbjct: 38 RAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARS 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q+IAEER GR LRVLNSYWVGEDST+ F EVI +D H AIR +P + WI +V K
Sbjct: 98 LQSIAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDMQWITKAVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRE+RGLTSA KKSRGLGKGH+F TIGGSR A WRR N ++L R R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204
>sp|Q7T3M9|RL15_SINKN 60S ribosomal protein L15
Length = 204
Score = 205 bits (521), Expect = 7e-53
Identities = 101/167 (60%), Positives = 119/167 (71%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGYKAKQG+V+ ATYGKPV+ GVNQ+K RS
Sbjct: 38 RAPRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARS 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q+ AEER GR +LRVLNSYWVGEDST+ F EVI +DP H A+R +P WI +V K
Sbjct: 98 LQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRNPDTQWITKAVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRE+RGLTSA KKSRGLGKGH+F TIGGSR A W+R N ++LRR R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWKRRNTLQLRRYR 204
>sp|Q90YV2|RL15_ICTPU 60S ribosomal protein L15
Length = 204
Score = 205 bits (521), Expect = 7e-53
Identities = 104/167 (62%), Positives = 118/167 (70%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGYKAKQG+VI ATYGKPV+ GVNQLK RS
Sbjct: 38 RAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARS 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q++AEER GR LRVLNSYWVGEDST+ F EVI +D H AIR +P WI +V K
Sbjct: 98 LQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRE+RGLTSA KKSRGLGKGH+F TIGGSR A WRR N ++LRR R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAPWRRRNTLQLRRYR 204
>sp|O17445|RL15_DROME 60S ribosomal protein L15
Length = 204
Score = 202 bits (515), Expect = 3e-52
Identities = 98/167 (58%), Positives = 118/167 (70%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGY+AKQGFVI TYGKP + GVNQLK R
Sbjct: 38 RSPRPTRPDKARRLGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRG 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q+IAEERVGR+ LRVLNSYW+ +D+++ + EVI +D H AIR DPKINWIC V K
Sbjct: 98 LQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRELRGLTSA K SRG+GKG+R++ TIGGSR A W+R N+ + RKR
Sbjct: 158 HRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204
>sp|Q7T3N6|RL15_HYPMO 60S ribosomal protein L15
Length = 204
Score = 202 bits (514), Expect = 4e-52
Identities = 101/167 (60%), Positives = 118/167 (70%)
Frame = +1
Query: 4 RVSKPTRPDRARRLGYKAKQGFVIXXXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRS 183
R +PTRPD+ARRLGYKAKQG+VI ATYGKPV+ GVNQ+K RS
Sbjct: 38 RAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARS 97
Query: 184 NQAIAEERVGRKFASLRVLNSYWVGEDSTFLFVEVICVDPAHPAIRVDPKINWICNSVQK 363
Q++AEER GR LRVLNSYWVGEDST+ F EVI +D H AIR +P WI +V+K
Sbjct: 98 LQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVRK 157
Query: 364 HRELRGLTSANKKSRGLGKGHRFTHTIGGSRSAFWRRNNQIKLRRKR 504
HRE+RGLTSA KKSRGLGKGH+F TIGGSR A W+R N ++L R R
Sbjct: 158 HREMRGLTSAGKKSRGLGKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,668,766
Number of Sequences: 369166
Number of extensions: 935528
Number of successful extensions: 2419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2357
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)