Planaria EST Database

DrC_00853

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00853
         (370 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47266|PIP_MYCGE  Putative proline iminopeptidase (PIP) (...    29   3.9  
sp|Q9Z7U0|TLC2_CHLPN  ADP,ATP carrier protein 2 (ADP/ATP tra...    29   3.9  
sp|Q9CF21|URK_LACLA  Uridine kinase (Uridine monophosphokina...    28   5.0  

>sp|P47266|PIP_MYCGE Putative proline iminopeptidase (PIP) (Prolyl aminopeptidase) (PAP)
          Length = 308

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 70  ESNQEKVITDYLTKRRKLVPHGLALFAGVVAIYAYSIYSIKQEQFTD 210
           E+N +K+++D+   R+KL      LF G        +Y+IK  Q  D
Sbjct: 77  ENNTDKLVSDFEILRQKLNIKNWTLFGGSWGSALALVYAIKHPQVVD 123

>sp|Q9Z7U0|TLC2_CHLPN ADP,ATP carrier protein 2 (ADP/ATP translocase 2)
          Length = 540

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 109 KRRKLVPHGLALFAGVVAIYAYSIYSIKQEQFTDDPLDM*F 231
           K ++L+P GL  F  +V  ++YSIY +  E ++   L M F
Sbjct: 128 KLQELLPQGLRGFIVMVRYWSYSIYYVMSELWSSVVLSMLF 168

>sp|Q9CF21|URK_LACLA Uridine kinase (Uridine monophosphokinase) (Cytidine
           monophosphokinase)
          Length = 206

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +1

Query: 40  ENEKAFIKRMESNQEKVI---TDYLTKRRKLVPHGLALFAGVVAIYAYSIYSIKQEQFTD 210
           ++   F +R ++N +  +   TDYL  + K + +G A+    + IY Y+ ++  QE +  
Sbjct: 45  QSHLTFEERTKTNYDHPLAFDTDYLIAQLKELQYGRAVD---IPIYDYAKHTRSQETYRQ 101

Query: 211 DPLDM 225
           +P+D+
Sbjct: 102 EPVDV 106

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,305,768
Number of Sequences: 369166
Number of extensions: 636782
Number of successful extensions: 1188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00853

  1. Dr_sW_017_L11
  2. Dr_sW_021_C23
  3. Dr_sW_021_L23