Planaria EST Database

DrC_00851

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00851
         (401 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53707|CS37_CANAL  37 kDa cell surface protein                  29   3.0  
sp|P34106|ALA2_PANMI  Alanine aminotransferase 2 (GPT) (Glut...    28   8.8  
sp|Q6EVY7|YCF2_NYMAL  Protein ycf2                                 28   8.8  

>sp|P53707|CS37_CANAL 37 kDa cell surface protein
          Length = 321

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 197 NW*KTRINRKKA-WF-NWQTTWFDWKKAWNDWEKAWNDRETKCN 322
           NW   +I+   A W  +++    DW KA +D  K WND + + N
Sbjct: 204 NWTNKQIDYASAEWHKHYEQAKGDWNKALDDLSKQWNDSKKQLN 247

>sp|P34106|ALA2_PANMI Alanine aminotransferase 2 (GPT) (Glutamic--pyruvic transaminase 2)
           (Glutamic--alanine transaminase 2) (ALAAT-2)
          Length = 482

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 27  VLADLNSDCDICKICEAEGLMSSAECCLDNSFYDACEDRMENSF 158
           VLA+ N  CDI + C+ EGL+  A+     + Y   +D+  NSF
Sbjct: 235 VLAEDNQ-CDIVRFCKNEGLVLLADEVYQENIY--VDDKKFNSF 275

>sp|Q6EVY7|YCF2_NYMAL Protein ycf2
          Length = 2253

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
 Frame = -1

Query: 335  LFITHYISFPYHSTP-------FPNHSTPFS 264
            +F+ HY +  Y  TP       FP+H  PFS
Sbjct: 1555 IFLAHYQTITYSQTPCGANSSHFPSHGKPFS 1585

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,819,845
Number of Sequences: 369166
Number of extensions: 595062
Number of successful extensions: 1715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00851

  1. Dr_sW_021_K22
  2. Dr_sW_003_H06