Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_H06
(216 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53707|CS37_CANAL 37 kDa cell surface protein 29 2.9
sp|Q6EVY7|YCF2_NYMAL Protein ycf2 28 8.5
>sp|P53707|CS37_CANAL 37 kDa cell surface protein
Length = 321
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 12 NW*KTRINRKKA-WF-NWQTTWFDWKKAWNDWEKAWNDRETKCN 137
NW +I+ A W +++ DW KA +D K WND + + N
Sbjct: 204 NWTNKQIDYASAEWHKHYEQAKGDWNKALDDLSKQWNDSKKQLN 247
>sp|Q6EVY7|YCF2_NYMAL Protein ycf2
Length = 2253
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Frame = -1
Query: 150 LFITHYISFPYHSTP-------FPNHSTPFS 79
+F+ HY + Y TP FP+H PFS
Sbjct: 1555 IFLAHYQTITYSQTPCGANSSHFPSHGKPFS 1585
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,852,254
Number of Sequences: 369166
Number of extensions: 269997
Number of successful extensions: 963
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)