Planaria EST Database

DrC_00844

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00844
         (673 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8EG26|SYQ_SHEON  Glutaminyl-tRNA synthetase (Glutamine--...    33   0.88 
sp|Q04747|SRFAB_BACSU  Surfactin synthetase subunit 2              31   2.6  
sp|Q18600|YTV2_CAEEL  Putative zinc metallopeptidase C44B7.11      31   2.6  
sp|Q73I59|CLPP_WOLPM  ATP-dependent Clp protease proteolytic...    31   3.3  
sp|Q5GS83|CLPP_WOLTR  ATP-dependent Clp protease proteolytic...    30   4.4  
sp|Q8TD17|ZN398_HUMAN  Zinc finger protein 398 (Zinc finger ...    30   5.7  
sp|P13051|UNG_HUMAN  Uracil-DNA glycosylase (UDG)                  30   5.7  
sp|P56038|RL13_HELPY  50S ribosomal protein L13                    30   5.7  
sp|Q9ZMY6|RL13_HELPJ  50S ribosomal protein L13                    30   5.7  
sp|Q02566|MYH6_MOUSE  Myosin heavy chain, cardiac muscle alp...    29   9.7  

>sp|Q8EG26|SYQ_SHEON Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS)
          Length = 556

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +3

Query: 141 YSVKYNNNGIKYLKVLNAQ--KEYDGTIPHCGKNL------IKSNAYLQPKSNLMKMKQV 296
           Y+V+  N G+ Y+  LNA   +EY GT+   GKN       ++ N  L  K  L + K+ 
Sbjct: 112 YAVELINKGLAYVCFLNADETREYRGTLKEPGKNSPYRDTPVEENLRLFGKMRLGEFKEG 171

Query: 297 HTGGLLPRIEGSSPILMERSTI 362
               L  +I+ +SP +  R  +
Sbjct: 172 EC-ALRAKIDMASPFMCMRDPV 192

>sp|Q04747|SRFAB_BACSU Surfactin synthetase subunit 2
          Length = 3587

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +3

Query: 198  KEYDGTIPHCGKNLIKSNAYLQPKSNLMKM----KQVHTGGL-LPRIEGSSPILMERSTI 362
            +EY G+IP  GK +  S AY+  +   ++      ++  GG+ + R   + P L E+  +
Sbjct: 768  REYGGSIP-IGKPIGNSTAYIMDEQQCLQPIGAPGELCVGGIGVARGYVNLPELTEKQFL 826

Query: 363  RDPWHPHSSQFGVNDYIDILGDGRI 437
             DP+ P    +   D    L DG I
Sbjct: 827  EDPFRPGERIYRTGDLARWLPDGNI 851

>sp|Q18600|YTV2_CAEEL Putative zinc metallopeptidase C44B7.11
          Length = 794

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/105 (18%), Positives = 42/105 (40%)
 Frame = +3

Query: 126 NATRFYSVKYNNNGIKYLKVLNAQKEYDGTIPHCGKNLIKSNAYLQPKSNLMKMKQVHTG 305
           N TRFY++ ++  G + +  +    EY G   H   N      +L P    +  + +   
Sbjct: 578 NDTRFYAISHDYRGAEDIPFVKKDPEYTGLQCHYENNPWCETPFLFPTKGRLNERNIRVR 637

Query: 306 GLLPRIEGSSPILMERSTIRDPWHPHSSQFGVNDYIDILGDGRIA 440
            +  R++   P+ +   + R        +  +     ++G G+I+
Sbjct: 638 SVDERLKFKHPVKILGISKRHGVDSKDGKGNIEYSFSVIGTGQIS 682

>sp|Q73I59|CLPP_WOLPM ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
          Length = 208

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 240 IKSNAYLQPKSNLMKMKQVHTGGLLPRIEGSSPILMERSTIRDP 371
           I +N  L+ K  L ++ + HTG  L +IEG    +MER    DP
Sbjct: 138 IHANEILRVKKKLNQIYEKHTGNSLKKIEG----MMERDKFMDP 177

>sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
          Length = 208

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 240 IKSNAYLQPKSNLMKMKQVHTGGLLPRIEGSSPILMERSTIRDP 371
           I +N  L+ K  L ++ + HTG  L +IEG    +MER    DP
Sbjct: 138 IHANEILRVKRKLNQIYEKHTGNSLKKIEG----MMERDKFMDP 177

>sp|Q8TD17|ZN398_HUMAN Zinc finger protein 398 (Zinc finger DNA binding protein p52/p71)
          Length = 642

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +3

Query: 183 VLNAQKEYDG----TIPHCGKNLIKSNAYLQPKSNLMKMKQVHTG 305
           +LN ++ + G    + PHCGK+ I+       K +LMK +++HTG
Sbjct: 526 LLNHRRLHTGERPFSCPHCGKSFIR-------KHHLMKHQRIHTG 563

>sp|P13051|UNG_HUMAN Uracil-DNA glycosylase (UDG)
          Length = 313

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 435 IAPQDFYHGPQWAKGAHLTIQRLAREIKSEEDYYKE 542
           I  QD YHGP  A G   ++QR      S E+ YKE
Sbjct: 150 ILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKE 185

>sp|P56038|RL13_HELPY 50S ribosomal protein L13
          Length = 141

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = +3

Query: 141 YSVKYNNNGIKYLKVLNAQKEYDGTIPHCGKNLIKSNAYLQPKSNLMKMKQVHTGGLLPR 320
           + V  N N +K+  +    KEY     + G    K+   +  K+   K+  +   G+LP+
Sbjct: 52  FVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKAP-EKLYHLAVRGMLPK 110

Query: 321 IEGSSPILMERSTIRDPWHPHSSQFGVND 407
            +    ++ +    RD  HPH++Q    D
Sbjct: 111 TKLGKAMIKKLKVYRDDKHPHTAQTSKKD 139

>sp|Q9ZMY6|RL13_HELPJ 50S ribosomal protein L13
          Length = 141

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = +3

Query: 141 YSVKYNNNGIKYLKVLNAQKEYDGTIPHCGKNLIKSNAYLQPKSNLMKMKQVHTGGLLPR 320
           + V  N N +K+  +    KEY     + G    K+   +  K+   K+  +   G+LP+
Sbjct: 52  FVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTP-EKLYHLAVRGMLPK 110

Query: 321 IEGSSPILMERSTIRDPWHPHSSQFGVND 407
            +    ++ +    RD  HPH++Q    D
Sbjct: 111 TKLGKAMIKKLKVYRDDKHPHTAQTSKKD 139

>sp|Q02566|MYH6_MOUSE Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha)
          Length = 1938

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
 Frame = +3

Query: 114  VLLSNATRFYSV--KYNNNGIKYLKVLNAQKEYDGTIPHCGKNLIKSNAYLQPKSNLMKM 287
            + LS A R  S   K+  N   +LK  + Q + D  + H   +L ++ A ++ ++NL++ 
Sbjct: 1629 IQLSQANRIASEAQKHLKNSQAHLK--DTQLQLDDAV-HANDDLKENIAIVERRNNLLQA 1685

Query: 288  KQVHTGGLLPRIEGSSPI----LMERSTIRDPWHPHSSQFGVN-------DYIDILGDGR 434
            +      ++ + E S  +    L+E S      H  ++   +N       D   +  +  
Sbjct: 1686 ELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSL-INQKKKMESDLTQLQTEVE 1744

Query: 435  IAPQDFYHGPQWAKGAHLTIQRLAREIKSEEDYYKEFEPAKYEIMKTVYLRQHK 596
             A Q+  +  + AK A      +A E+K E+D     E  K  + +T+   QH+
Sbjct: 1745 EAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1798

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,384,140
Number of Sequences: 369166
Number of extensions: 1481881
Number of successful extensions: 3727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3724
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00844

  1. Dr_sW_021_J03
  2. Dr_sW_023_L14