Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J03
(540 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8EG26|SYQ_SHEON Glutaminyl-tRNA synthetase (Glutamine--... 33 0.58
sp|Q04747|SRFAB_BACSU Surfactin synthetase subunit 2 31 1.7
sp|Q18600|YTV2_CAEEL Putative zinc metallopeptidase C44B7.11 31 1.7
sp|Q73I59|CLPP_WOLPM ATP-dependent Clp protease proteolytic... 31 2.2
sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic... 30 2.9
sp|Q8TD17|ZN398_HUMAN Zinc finger protein 398 (Zinc finger ... 30 3.7
sp|P56038|RL13_HELPY 50S ribosomal protein L13 30 3.7
sp|Q9ZMY6|RL13_HELPJ 50S ribosomal protein L13 30 3.7
sp|P39531|YJU4_YEAST Hypothetical protein YJL204c 29 6.4
sp|Q07606|T4BB_BACCO Restriction enzyme BgcI beta subunit (... 29 8.3
>sp|Q8EG26|SYQ_SHEON Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS)
Length = 556
Score = 32.7 bits (73), Expect = 0.58
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +3
Query: 141 YSVKYNNNGIKYLKVLNAQ--KEYDGTIPHCGKNL------IKSNAYLQPKSNLMKMKQV 296
Y+V+ N G+ Y+ LNA +EY GT+ GKN ++ N L K L + K+
Sbjct: 112 YAVELINKGLAYVCFLNADETREYRGTLKEPGKNSPYRDTPVEENLRLFGKMRLGEFKEG 171
Query: 297 HTGGLLPRIEGSSPILMERSTI 362
L +I+ +SP + R +
Sbjct: 172 EC-ALRAKIDMASPFMCMRDPV 192
>sp|Q04747|SRFAB_BACSU Surfactin synthetase subunit 2
Length = 3587
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +3
Query: 198 KEYDGTIPHCGKNLIKSNAYLQPKSNLMKM----KQVHTGGL-LPRIEGSSPILMERSTI 362
+EY G+IP GK + S AY+ + ++ ++ GG+ + R + P L E+ +
Sbjct: 768 REYGGSIP-IGKPIGNSTAYIMDEQQCLQPIGAPGELCVGGIGVARGYVNLPELTEKQFL 826
Query: 363 RDPWHPHSSQFGVNDYIDILGDGRI 437
DP+ P + D L DG I
Sbjct: 827 EDPFRPGERIYRTGDLARWLPDGNI 851
>sp|Q18600|YTV2_CAEEL Putative zinc metallopeptidase C44B7.11
Length = 794
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/105 (18%), Positives = 42/105 (40%)
Frame = +3
Query: 126 NATRFYSVKYNNNGIKYLKVLNAQKEYDGTIPHCGKNLIKSNAYLQPKSNLMKMKQVHTG 305
N TRFY++ ++ G + + + EY G H N +L P + + +
Sbjct: 578 NDTRFYAISHDYRGAEDIPFVKKDPEYTGLQCHYENNPWCETPFLFPTKGRLNERNIRVR 637
Query: 306 GLLPRIEGSSPILMERSTIRDPWHPHSSQFGVNDYIDILGDGRIA 440
+ R++ P+ + + R + + ++G G+I+
Sbjct: 638 SVDERLKFKHPVKILGISKRHGVDSKDGKGNIEYSFSVIGTGQIS 682
>sp|Q73I59|CLPP_WOLPM ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 208
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 240 IKSNAYLQPKSNLMKMKQVHTGGLLPRIEGSSPILMERSTIRDP 371
I +N L+ K L ++ + HTG L +IEG +MER DP
Sbjct: 138 IHANEILRVKKKLNQIYEKHTGNSLKKIEG----MMERDKFMDP 177
>sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 208
Score = 30.4 bits (67), Expect = 2.9
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 240 IKSNAYLQPKSNLMKMKQVHTGGLLPRIEGSSPILMERSTIRDP 371
I +N L+ K L ++ + HTG L +IEG +MER DP
Sbjct: 138 IHANEILRVKRKLNQIYEKHTGNSLKKIEG----MMERDKFMDP 177
>sp|Q8TD17|ZN398_HUMAN Zinc finger protein 398 (Zinc finger DNA binding protein p52/p71)
Length = 642
Score = 30.0 bits (66), Expect = 3.7
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3
Query: 183 VLNAQKEYDG----TIPHCGKNLIKSNAYLQPKSNLMKMKQVHTG 305
+LN ++ + G + PHCGK+ I+ K +LMK +++HTG
Sbjct: 526 LLNHRRLHTGERPFSCPHCGKSFIR-------KHHLMKHQRIHTG 563
>sp|P56038|RL13_HELPY 50S ribosomal protein L13
Length = 141
Score = 30.0 bits (66), Expect = 3.7
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +3
Query: 141 YSVKYNNNGIKYLKVLNAQKEYDGTIPHCGKNLIKSNAYLQPKSNLMKMKQVHTGGLLPR 320
+ V N N +K+ + KEY + G K+ + K+ K+ + G+LP+
Sbjct: 52 FVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKAP-EKLYHLAVRGMLPK 110
Query: 321 IEGSSPILMERSTIRDPWHPHSSQFGVND 407
+ ++ + RD HPH++Q D
Sbjct: 111 TKLGKAMIKKLKVYRDDKHPHTAQTSKKD 139
>sp|Q9ZMY6|RL13_HELPJ 50S ribosomal protein L13
Length = 141
Score = 30.0 bits (66), Expect = 3.7
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +3
Query: 141 YSVKYNNNGIKYLKVLNAQKEYDGTIPHCGKNLIKSNAYLQPKSNLMKMKQVHTGGLLPR 320
+ V N N +K+ + KEY + G K+ + K+ K+ + G+LP+
Sbjct: 52 FVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTP-EKLYHLAVRGMLPK 110
Query: 321 IEGSSPILMERSTIRDPWHPHSSQFGVND 407
+ ++ + RD HPH++Q D
Sbjct: 111 TKLGKAMIKKLKVYRDDKHPHTAQTSKKD 139
>sp|P39531|YJU4_YEAST Hypothetical protein YJL204c
Length = 840
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +3
Query: 60 FIFLYIF*NSFQFKHYITVLLSNATRFYSVKYNNNGIKYLKVLNAQKEYDGTIPHCGKNL 239
F+ Y NS+ K Y +N F+ Y+N+ +K ++LN K+Y+ KN
Sbjct: 96 FVKFYRCYNSYARKLYN----NNLANFFPTSYSNDPLKQTRILNFIKKYN----FSNKND 147
Query: 240 IKSNAYLQPKSNLMK 284
I++ ++ N+++
Sbjct: 148 IETFTRIETNFNILR 162
>sp|Q07606|T4BB_BACCO Restriction enzyme BgcI beta subunit (S.BcgI)
Length = 341
Score = 28.9 bits (63), Expect = 8.3
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 105 YITVLLSNATRFYSVKY--NNNGIKYLKVL 188
YIT ++ NAT+ +S Y N+ +K LK+L
Sbjct: 105 YITTMIENATKMFSYSYTINSTRLKSLKIL 134
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,871,529
Number of Sequences: 369166
Number of extensions: 1246759
Number of successful extensions: 2949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2946
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)