Planaria EST Database

DrC_00828

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00828
         (536 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10845|BXA1_CLOBO  Botulinum neurotoxin type A precursor ...    33   0.34 
sp|Q45894|BXA2_CLOBO  Botulinum neurotoxin type A precursor ...    30   3.7  

>sp|P10845|BXA1_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
            (BOTOX) [Contains: Botulinum neurotoxin A light-chain;
            Botulinum neurotoxin A heavy-chain]
          Length = 1296

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
 Frame = -3

Query: 399  NLKLNFIK---SGRSMDECGLTALSSI---SNIGY-LDGLQDSQKII*KFTYNLADSSLS 241
            N +LN  K   +GR +D+  ++ L +I   +NI + LDG +D+ + I    +NL D  L+
Sbjct: 1021 NNRLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELN 1080

Query: 240  DKDLKFLYSHVS 205
            +K++K LY + S
Sbjct: 1081 EKEIKDLYDNQS 1092

>sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
            (BOTOX) [Contains: Botulinum neurotoxin A light-chain;
            Botulinum neurotoxin A heavy-chain]
          Length = 1296

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = -3

Query: 375  SGRSMDECGLTALSSI--SN--IGYLDGLQDSQKII*KFTYNLADSSLSDKDLKFLYSHV 208
            +GR +D+  ++ L +I  SN  +  LDG +D ++ I    +NL D  L++K++K LY   
Sbjct: 1032 NGRLIDQKPISNLGNIHASNKIMFKLDGCRDPRRYIMIKYFNLFDKELNEKEIKDLYDSQ 1091

Query: 207  S 205
            S
Sbjct: 1092 S 1092

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,404,217
Number of Sequences: 369166
Number of extensions: 899213
Number of successful extensions: 1560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00828

  1. Dr_sW_021_C07
  2. Dr_sW_026_A21