Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_A21
(518 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P10845|BXA1_CLOBO Botulinum neurotoxin type A precursor ... 33 0.31
sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor ... 30 3.4
>sp|P10845|BXA1_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
(BOTOX) [Contains: Botulinum neurotoxin A light-chain;
Botulinum neurotoxin A heavy-chain]
Length = 1296
Score = 33.5 bits (75), Expect = 0.31
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Frame = -3
Query: 381 NLKLNFIK---SGRSMDECGLTALSSI---SNIGY-LDGLQDSQKII*KFTYNLADSSLS 223
N +LN K +GR +D+ ++ L +I +NI + LDG +D+ + I +NL D L+
Sbjct: 1021 NNRLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELN 1080
Query: 222 DKDLKFLYSHVS 187
+K++K LY + S
Sbjct: 1081 EKEIKDLYDNQS 1092
>sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
(BOTOX) [Contains: Botulinum neurotoxin A light-chain;
Botulinum neurotoxin A heavy-chain]
Length = 1296
Score = 30.0 bits (66), Expect = 3.4
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = -3
Query: 357 SGRSMDECGLTALSSI--SN--IGYLDGLQDSQKII*KFTYNLADSSLSDKDLKFLYSHV 190
+GR +D+ ++ L +I SN + LDG +D ++ I +NL D L++K++K LY
Sbjct: 1032 NGRLIDQKPISNLGNIHASNKIMFKLDGCRDPRRYIMIKYFNLFDKELNEKEIKDLYDSQ 1091
Query: 189 S 187
S
Sbjct: 1092 S 1092
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,808,535
Number of Sequences: 369166
Number of extensions: 870939
Number of successful extensions: 1511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)